FC869264

Overview
NameFC869264
Unique NameFC869264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_ENT38 (GTP-binding protein era homolog OS=Enterobacter sp. (strain 638) GN=era PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 37/77 (48.05%), Postives = 56/77 (72.73%), Query Frame = 1
Query:  418 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            G++A++G+PNVGKSTL N ++GQK+SI + K QTT+HRI+GI +  EYQ I  DTPG+  ++   ++ +M K   S+
Sbjct:    9 GFIAIVGRPNVGKSTLLNTLLGQKISITSRKAQTTRHRIVGIHTEGEYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_CLONN (GTP-binding protein era homolog OS=Clostridium novyi (strain NT) GN=era PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 36/74 (48.65%), Postives = 56/74 (75.68%), Query Frame = 1
Query:  412 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 633
            KSG+++++G+PNVGKSTL N+++G+KLSIV+ +PQTT++ I  + +  +YQ++  DTPG I K  H L   M+K
Sbjct:    3 KSGFISIIGRPNVGKSTLTNEILGEKLSIVSCRPQTTRNNIRAVLTRDDYQLVFLDTPG-IHKPRHKLGEYMVK 75          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_ACTPJ (GTP-binding protein era homolog OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=era PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 37/82 (45.12%), Postives = 58/82 (70.73%), Query Frame = 1
Query:  403 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            P    G++A++G+PNVGKSTL N+++GQK+SI + K QTT+HRI+GI +  +YQ I  DTPG+  ++   ++ +M +   SA
Sbjct:    8 PKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEEKRAINRLMNRAASSA 89          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_ACTP7 (GTP-binding protein era homolog OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=era PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 37/82 (45.12%), Postives = 58/82 (70.73%), Query Frame = 1
Query:  403 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            P    G++A++G+PNVGKSTL N+++GQK+SI + K QTT+HRI+GI +  +YQ I  DTPG+  ++   ++ +M +   SA
Sbjct:    8 PKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEEKRAINRLMNRAASSA 89          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_ACTP2 (GTP-binding protein era homolog OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=era PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 37/82 (45.12%), Postives = 58/82 (70.73%), Query Frame = 1
Query:  403 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            P    G++A++G+PNVGKSTL N+++GQK+SI + K QTT+HRI+GI +  +YQ I  DTPG+  ++   ++ +M +   SA
Sbjct:    8 PKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEEKRAINRLMNRAASSA 89          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_STAAW (GTP-binding protein era homolog OS=Staphylococcus aureus (strain MW2) GN=era PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 37/75 (49.33%), Postives = 57/75 (76.00%), Query Frame = 1
Query:  409 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 633
            HKSG+V+++G+PNVGKST  N++IG K++I+++K QTT+++I G+ +  + Q+I  DTPGI + K H L   MMK
Sbjct:    4 HKSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK-HKLGDYMMK 77          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_STAAT (GTP-binding protein era homolog OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=era PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 37/75 (49.33%), Postives = 57/75 (76.00%), Query Frame = 1
Query:  409 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 633
            HKSG+V+++G+PNVGKST  N++IG K++I+++K QTT+++I G+ +  + Q+I  DTPGI + K H L   MMK
Sbjct:    4 HKSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK-HKLGDYMMK 77          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_STAAS (GTP-binding protein era homolog OS=Staphylococcus aureus (strain MSSA476) GN=era PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 37/75 (49.33%), Postives = 57/75 (76.00%), Query Frame = 1
Query:  409 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 633
            HKSG+V+++G+PNVGKST  N++IG K++I+++K QTT+++I G+ +  + Q+I  DTPGI + K H L   MMK
Sbjct:    4 HKSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK-HKLGDYMMK 77          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_STAAR (GTP-binding protein era homolog OS=Staphylococcus aureus (strain MRSA252) GN=era PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 37/75 (49.33%), Postives = 57/75 (76.00%), Query Frame = 1
Query:  409 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 633
            HKSG+V+++G+PNVGKST  N++IG K++I+++K QTT+++I G+ +  + Q+I  DTPGI + K H L   MMK
Sbjct:    4 HKSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK-HKLGDYMMK 77          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_STAAN (GTP-binding protein era homolog OS=Staphylococcus aureus (strain N315) GN=era PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 37/75 (49.33%), Postives = 57/75 (76.00%), Query Frame = 1
Query:  409 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 633
            HKSG+V+++G+PNVGKST  N++IG K++I+++K QTT+++I G+ +  + Q+I  DTPGI + K H L   MMK
Sbjct:    4 HKSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK-HKLGDYMMK 77          
The following BLAST results are available for this feature:
BLAST of FC869264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
ERA_ENT387.535e-1548.05GTP-binding protein era homolog OS=Enterobacter sp... [more]
ERA_CLONN7.535e-1548.65GTP-binding protein era homolog OS=Clostridium nov... [more]
ERA_ACTPJ7.535e-1545.12GTP-binding protein era homolog OS=Actinobacillus ... [more]
ERA_ACTP77.535e-1545.12GTP-binding protein era homolog OS=Actinobacillus ... [more]
ERA_ACTP27.535e-1545.12GTP-binding protein era homolog OS=Actinobacillus ... [more]
ERA_STAAW9.841e-1549.33GTP-binding protein era homolog OS=Staphylococcus ... [more]
ERA_STAAT9.841e-1549.33GTP-binding protein era homolog OS=Staphylococcus ... [more]
ERA_STAAS9.841e-1549.33GTP-binding protein era homolog OS=Staphylococcus ... [more]
ERA_STAAR9.841e-1549.33GTP-binding protein era homolog OS=Staphylococcus ... [more]
ERA_STAAN9.841e-1549.33GTP-binding protein era homolog OS=Staphylococcus ... [more]

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Properties
Property NameValue
Genbank descriptionC31010C11EF AbioticL1 Citrus clementina cDNA clone C31010C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869264 ID=FC869264; Name=FC869264; organism=Citrus clementina; type=EST; length=711bp
GAACCGATAAGAGAGAGAGATCGTTACTTGAGAGCAGGCGAATGAAATCA
ACATGAAAGCAAAGCTCCGATAATGGAGCTAGGTGTACACATATCCTCTT
CTTTTGGCAGTCTGTTCCCTCATTACAGCACATTAACAGCATATAGAGAA
ATTAAATTTGGGTTCCAAGGCAGAAGTAGTAGTATCACTTGTAGAAGCAA
TGAGCACCAAAGCCTTGTATTGTCAGAGAAAGAAGTACAGCAACAGAAGC
TTTGGAGTAACCAACGGGAAATGGACTTAGACGATGGTGATGAAATGGAA
TTTGACGATGCATCGTCGTTTCTATCTCTGTCTGAAAAACCAGACAGGAA
TATGGCTTCGCCGGACGACTACGAGATTGAAGAATTTGACTACGCCTCTC
ATCCAAATCACAAAAGCGGATATGTGGCAGTACTAGGGAAGCCAAATGTG
GGGAAAAGTACGCTCGCAAACCAAATGATCGGTCAAAAGCTCTCAATTGT
TACAAATAAGCCCCAAACTACAAAGCACCGTATTCTTGGTATCTGTTCTG
GTCCAGAGTATCAGATGATACTTTATGATACCCCTGGTATAATTGAGAAG
AAAATTCACATGTTGGACTCTATGATGATGAAGAATGTCCGCAGTGCTGG
GATTACGCTGACTGTATTGTTGTTCTCGTTGATGCTTGTAAGCTCCTGAA
GAATTGATGAA
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