FC869264

Overview
NameFC869264
Unique NameFC869264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_LISMH (GTP-binding protein era homolog OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=era PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 38/74 (51.35%), Postives = 57/74 (77.03%), Query Frame = 1
Query:  412 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 633
            KSG+VA++G+PNVGKSTL N +IGQK++I+++K QTT++++ G+ +  E Q+I  DTPGI + K H L   M+K
Sbjct:    6 KSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGIHKPK-HKLGDFMVK 78          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_LISMF (GTP-binding protein era homolog OS=Listeria monocytogenes serotype 4b (strain F2365) GN=era PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 38/74 (51.35%), Postives = 57/74 (77.03%), Query Frame = 1
Query:  412 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 633
            KSG+VA++G+PNVGKSTL N +IGQK++I+++K QTT++++ G+ +  E Q+I  DTPGI + K H L   M+K
Sbjct:    6 KSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGIHKPK-HKLGDFMVK 78          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_LISMC (GTP-binding protein era homolog OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=era PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 38/74 (51.35%), Postives = 57/74 (77.03%), Query Frame = 1
Query:  412 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 633
            KSG+VA++G+PNVGKSTL N +IGQK++I+++K QTT++++ G+ +  E Q+I  DTPGI + K H L   M+K
Sbjct:    6 KSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGIHKPK-HKLGDFMVK 78          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_LISIN (GTP-binding protein era homolog OS=Listeria innocua GN=era PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 38/74 (51.35%), Postives = 57/74 (77.03%), Query Frame = 1
Query:  412 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 633
            KSG+VA++G+PNVGKSTL N +IGQK++I+++K QTT++++ G+ +  E Q+I  DTPGI + K H L   M+K
Sbjct:    6 KSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVFTTDESQIIFIDTPGIHKPK-HKLGDFMVK 78          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_HALOH (GTP-binding protein era homolog OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=era PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 38/76 (50.00%), Postives = 58/76 (76.32%), Query Frame = 1
Query:  406 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 633
            ++KSG+V+V+G+PNVGKSTL N +IGQK+ I + +PQTT++ + GI + PE Q++  DTPG I K  + LD+ M++
Sbjct:    2 SYKSGFVSVIGRPNVGKSTLINNLIGQKVVITSPRPQTTRNSVRGIYTRPEGQIVFVDTPG-IHKARNKLDNYMLE 76          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_CYAP8 (GTP-binding protein era homolog OS=Cyanothece sp. (strain PCC 8801) GN=era PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 38/79 (48.10%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  412 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            KSG+V ++G+PNVGKSTL NQ++GQK++I +   QTT++R+ GI +  E Q+I  DTPG I K  H L  ++++N  +A
Sbjct:   21 KSGFVGIIGRPNVGKSTLMNQLVGQKIAITSPVSQTTRNRLRGILTTEEAQIIFVDTPG-IHKPHHQLGKILVQNAEAA 98          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_COXB2 (GTP-binding protein era homolog OS=Coxiella burnetii (strain CbuG_Q212) GN=era PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 1
Query:  418 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            GY A++G+PNVGKSTL NQ++GQK+SI + KPQTT+++ILG+ +  + Q+I  DTPG+       ++  M +  R A
Sbjct:    7 GYAAIIGRPNVGKSTLLNQLLGQKISITSRKPQTTRYQILGVKTFKDIQVIYVDTPGLHASTERTINRYMNRTARGA 83          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_BORPE (GTP-binding protein era homolog OS=Bordetella pertussis GN=era PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  397 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            S+P  ++G+VA++G+PNVGKSTL N +IG K+SIV+ K QTT+HRI G+ +    Q +  DTPG   +    ++ MM + V  A
Sbjct:    2 SNPQFRAGFVAIVGRPNVGKSTLTNALIGTKISIVSRKAQTTRHRIHGVLTREHEQFVFVDTPGFQTRHGGAMNRMMNRVVTQA 85          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_BORPA (GTP-binding protein era homolog OS=Bordetella parapertussis GN=era PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  397 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            S+P  ++G+VA++G+PNVGKSTL N +IG K+SIV+ K QTT+HRI G+ +    Q +  DTPG   +    ++ MM + V  A
Sbjct:    2 SNPQFRAGFVAIVGRPNVGKSTLTNALIGTKISIVSRKAQTTRHRIHGVLTREHEQFVFVDTPGFQTRHGGAMNRMMNRVVTQA 85          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_BORBR (GTP-binding protein era homolog OS=Bordetella bronchiseptica GN=era PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  397 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            S+P  ++G+VA++G+PNVGKSTL N +IG K+SIV+ K QTT+HRI G+ +    Q +  DTPG   +    ++ MM + V  A
Sbjct:    2 SNPQFRAGFVAIVGRPNVGKSTLTNALIGTKISIVSRKAQTTRHRIHGVLTREHEQFVFVDTPGFQTRHGGAMNRMMNRVVTQA 85          
The following BLAST results are available for this feature:
BLAST of FC869264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
ERA_LISMH1.285e-1451.35GTP-binding protein era homolog OS=Listeria monocy... [more]
ERA_LISMF1.285e-1451.35GTP-binding protein era homolog OS=Listeria monocy... [more]
ERA_LISMC1.285e-1451.35GTP-binding protein era homolog OS=Listeria monocy... [more]
ERA_LISIN1.285e-1451.35GTP-binding protein era homolog OS=Listeria innocu... [more]
ERA_HALOH1.285e-1450.00GTP-binding protein era homolog OS=Halothermothrix... [more]
ERA_CYAP81.285e-1448.10GTP-binding protein era homolog OS=Cyanothece sp. ... [more]
ERA_COXB21.285e-1446.75GTP-binding protein era homolog OS=Coxiella burnet... [more]
ERA_BORPE1.285e-1445.24GTP-binding protein era homolog OS=Bordetella pert... [more]
ERA_BORPA1.285e-1445.24GTP-binding protein era homolog OS=Bordetella para... [more]
ERA_BORBR1.285e-1445.24GTP-binding protein era homolog OS=Bordetella bron... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31010C11EF AbioticL1 Citrus clementina cDNA clone C31010C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869264 ID=FC869264; Name=FC869264; organism=Citrus clementina; type=EST; length=711bp
GAACCGATAAGAGAGAGAGATCGTTACTTGAGAGCAGGCGAATGAAATCA
ACATGAAAGCAAAGCTCCGATAATGGAGCTAGGTGTACACATATCCTCTT
CTTTTGGCAGTCTGTTCCCTCATTACAGCACATTAACAGCATATAGAGAA
ATTAAATTTGGGTTCCAAGGCAGAAGTAGTAGTATCACTTGTAGAAGCAA
TGAGCACCAAAGCCTTGTATTGTCAGAGAAAGAAGTACAGCAACAGAAGC
TTTGGAGTAACCAACGGGAAATGGACTTAGACGATGGTGATGAAATGGAA
TTTGACGATGCATCGTCGTTTCTATCTCTGTCTGAAAAACCAGACAGGAA
TATGGCTTCGCCGGACGACTACGAGATTGAAGAATTTGACTACGCCTCTC
ATCCAAATCACAAAAGCGGATATGTGGCAGTACTAGGGAAGCCAAATGTG
GGGAAAAGTACGCTCGCAAACCAAATGATCGGTCAAAAGCTCTCAATTGT
TACAAATAAGCCCCAAACTACAAAGCACCGTATTCTTGGTATCTGTTCTG
GTCCAGAGTATCAGATGATACTTTATGATACCCCTGGTATAATTGAGAAG
AAAATTCACATGTTGGACTCTATGATGATGAAGAATGTCCGCAGTGCTGG
GATTACGCTGACTGTATTGTTGTTCTCGTTGATGCTTGTAAGCTCCTGAA
GAATTGATGAA
back to top