FC869264

Overview
NameFC869264
Unique NameFC869264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_BACSU (GTP-binding protein era homolog OS=Bacillus subtilis GN=era PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 37/79 (46.84%), Postives = 59/79 (74.68%), Query Frame = 1
Query:  397 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 633
            ++ + KSG+V+++G+PNVGKST  N++IGQK++I+++KPQTT++++ G+ +    Q I  DTPGI + K H L   MMK
Sbjct:    2 TNESFKSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPGIHKPK-HKLGDFMMK 79          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_NITEU (GTP-binding protein era homolog OS=Nitrosomonas europaea GN=era PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  403 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 639
            P +K+GY++++G+PNVGKSTL N +I QK+SI + K QTT+HRI GI +  + Q I  DTPG   +    L+ +M + V
Sbjct:    4 PGYKTGYISIVGRPNVGKSTLLNHLIKQKISITSRKAQTTRHRIHGILTDAQSQFIFVDTPGFQTRHRSQLNQVMNRVV 82          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_KLEP7 (GTP-binding protein era homolog OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=era PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 37/77 (48.05%), Postives = 56/77 (72.73%), Query Frame = 1
Query:  418 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            G+VA++G+PNVGKSTL N+++GQK+SI + K QTT+HRI+GI +   YQ I  DTPG+  ++   ++ +M K   S+
Sbjct:    9 GFVAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_KLEP3 (GTP-binding protein era homolog OS=Klebsiella pneumoniae (strain 342) GN=era PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 37/77 (48.05%), Postives = 56/77 (72.73%), Query Frame = 1
Query:  418 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            G+VA++G+PNVGKSTL N+++GQK+SI + K QTT+HRI+GI +   YQ I  DTPG+  ++   ++ +M K   S+
Sbjct:    9 GFVAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_ESCF3 (GTP-binding protein era homolog OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=era PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 39/83 (46.99%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  406 NHKS--GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            N KS  G++A++G+PNVGKSTL N+++GQK+SI + K QTT+HRI+GI +   YQ I  DTPG+  ++   ++ +M K   S+
Sbjct:    3 NDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_CLOK5 (GTP-binding protein era homolog OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=era PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 39/79 (49.37%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  412 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            KSG++ ++G+PNVGKSTL N ++G+KLSIV+ KPQTT++ I  I +  ++Q+I  DTPGI + K H L + M+K   S+
Sbjct:    3 KSGFITIIGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNSIQTILTRDDFQLIFVDTPGIHKPK-HKLGNYMVKVAESS 80          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_CLOK1 (GTP-binding protein era homolog OS=Clostridium kluyveri (strain NBRC 12016) GN=era PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 39/79 (49.37%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  412 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            KSG++ ++G+PNVGKSTL N ++G+KLSIV+ KPQTT++ I  I +  ++Q+I  DTPGI + K H L + M+K   S+
Sbjct:    3 KSGFITIIGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNSIQTILTRDDFQLIFVDTPGIHKPK-HKLGNYMVKVAESS 80          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_ALKOO (GTP-binding protein era homolog OS=Alkaliphilus oremlandii (strain OhILAs) GN=era PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 36/74 (48.65%), Postives = 58/74 (78.38%), Query Frame = 1
Query:  412 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 633
            KSG+V ++G+PNVGKSTL N++IG+K++I+++KPQTT+++I  + +  +YQ++  DTPGI + K H L   M+K
Sbjct:    4 KSGFVTIIGRPNVGKSTLMNKIIGEKIAIMSDKPQTTRNKIQCVYTQKDYQIVFLDTPGIHKPK-HKLGQYMVK 76          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_SYNAS (GTP-binding protein era homolog OS=Syntrophus aciditrophicus (strain SB) GN=era PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14
Identity = 34/60 (56.67%), Postives = 49/60 (81.67%), Query Frame = 1
Query:  412 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGI 591
            KSG++ ++G+PNVGKSTL N ++G+KL+I+T+KPQTT++RI+GI +    Q I  DTPGI
Sbjct:   14 KSGFIGIIGRPNVGKSTLLNGILGEKLAIITHKPQTTRNRIMGIRNADNAQFIFVDTPGI 73          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_STAES (GTP-binding protein era homolog OS=Staphylococcus epidermidis (strain ATCC 12228) GN=era PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14
Identity = 36/75 (48.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:  409 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 633
            HKSG+V+++G+PNVGKST  N++IG K++I+++K QTT+++I G+ +  + Q+I  DTPGI + K H L   MM+
Sbjct:    4 HKSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPK-HKLGDYMMR 77          
The following BLAST results are available for this feature:
BLAST of FC869264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
ERA_BACSU1.285e-1446.84GTP-binding protein era homolog OS=Bacillus subtil... [more]
ERA_NITEU1.679e-1446.84GTP-binding protein era homolog OS=Nitrosomonas eu... [more]
ERA_KLEP71.679e-1448.05GTP-binding protein era homolog OS=Klebsiella pneu... [more]
ERA_KLEP31.679e-1448.05GTP-binding protein era homolog OS=Klebsiella pneu... [more]
ERA_ESCF31.679e-1446.99GTP-binding protein era homolog OS=Escherichia fer... [more]
ERA_CLOK51.679e-1449.37GTP-binding protein era homolog OS=Clostridium klu... [more]
ERA_CLOK11.679e-1449.37GTP-binding protein era homolog OS=Clostridium klu... [more]
ERA_ALKOO1.679e-1448.65GTP-binding protein era homolog OS=Alkaliphilus or... [more]
ERA_SYNAS2.192e-1456.67GTP-binding protein era homolog OS=Syntrophus acid... [more]
ERA_STAES2.192e-1448.00GTP-binding protein era homolog OS=Staphylococcus ... [more]

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Properties
Property NameValue
Genbank descriptionC31010C11EF AbioticL1 Citrus clementina cDNA clone C31010C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869264 ID=FC869264; Name=FC869264; organism=Citrus clementina; type=EST; length=711bp
GAACCGATAAGAGAGAGAGATCGTTACTTGAGAGCAGGCGAATGAAATCA
ACATGAAAGCAAAGCTCCGATAATGGAGCTAGGTGTACACATATCCTCTT
CTTTTGGCAGTCTGTTCCCTCATTACAGCACATTAACAGCATATAGAGAA
ATTAAATTTGGGTTCCAAGGCAGAAGTAGTAGTATCACTTGTAGAAGCAA
TGAGCACCAAAGCCTTGTATTGTCAGAGAAAGAAGTACAGCAACAGAAGC
TTTGGAGTAACCAACGGGAAATGGACTTAGACGATGGTGATGAAATGGAA
TTTGACGATGCATCGTCGTTTCTATCTCTGTCTGAAAAACCAGACAGGAA
TATGGCTTCGCCGGACGACTACGAGATTGAAGAATTTGACTACGCCTCTC
ATCCAAATCACAAAAGCGGATATGTGGCAGTACTAGGGAAGCCAAATGTG
GGGAAAAGTACGCTCGCAAACCAAATGATCGGTCAAAAGCTCTCAATTGT
TACAAATAAGCCCCAAACTACAAAGCACCGTATTCTTGGTATCTGTTCTG
GTCCAGAGTATCAGATGATACTTTATGATACCCCTGGTATAATTGAGAAG
AAAATTCACATGTTGGACTCTATGATGATGAAGAATGTCCGCAGTGCTGG
GATTACGCTGACTGTATTGTTGTTCTCGTTGATGCTTGTAAGCTCCTGAA
GAATTGATGAA
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