FC869281

Overview
NameFC869281
Unique NameFC869281
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869281 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.510e-18
Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 1
Query:  415 PPQSEVTHRK----KFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNPVLTGDDVV 648
            P  +  TH      ++RGVR+RPWGR+AAEIRDP ++ R+WLGTFDT EEAA  YD AA   +GA A TNFP  +   D  V
Sbjct:   10 PATTNQTHNNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFPTFLELSDQKV 91          
BLAST of FC869281 vs. ExPASy Swiss-Prot
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.510e-18
Identity = 43/72 (59.72%), Postives = 50/72 (69.44%), Query Frame = 1
Query:  403 AHQPPPQSEVTHRKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFP 618
            A +P P   +T +K +RGVR+R WG+W AEIR P  R RLWLGTFDT EEAA  YD AA KL+G  A  NFP
Sbjct:   78 APKPVPMKNMTAQKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFP 149          
BLAST of FC869281 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.242e-17
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  442 KKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNPVLT 633
            KK+RGVR+RPWG+WAAEIRDP++  R+WLGTF+T E AA  YD AA++ +G+ A  NFP  V T
Sbjct:   59 KKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENVGT 122          
BLAST of FC869281 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.242e-17
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 1
Query:  421 QSEVTHRKKFRGVRRRPWGRWAAEIRDPNRR-KRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPN 621
            QS+   + +FRGVRRRPWG++AAEIRDP+R   RLWLGTF+T EEAA  YD+AA  L+G  A+ NFPN
Sbjct:   11 QSQDDKQARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPN 78          
BLAST of FC869281 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.622e-17
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1
Query:  448 FRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNP 624
            +RGVR+RPWGR+AAEIRDP ++ R+WLGTFDT EEAA  YD AA + +G  A TNFP P
Sbjct:   27 YRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPLP 85          
BLAST of FC869281 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 1
Query:  418 PQSEVTHRKKFRGVRRRPWGRWAAEIRDPNRR-KRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFP 618
            P SE   +K +RGVR+RPWG++AAEIRDPN+R  R+WLGTFDT  EAA  YD+AA +L+G+ A+ NFP
Sbjct:  147 PVSE-EEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFP 213          
BLAST of FC869281 vs. ExPASy Swiss-Prot
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.720e-17
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  430 VTHRKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFP 618
            + H KKFRGVR+R WG W +EIR P  ++R+WLGTFDT E AA  YDQAAV + G +A TNFP
Sbjct:    1 MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFP 63          
BLAST of FC869281 vs. ExPASy Swiss-Prot
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.164e-17
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 1
Query:  442 KKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFP 618
            KKFRGVR+R WG W AEIR P  ++R+WLGTF+T EEAA  YD+AAV + G NA TNFP
Sbjct:    5 KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFP 63          
BLAST of FC869281 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.164e-17
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1
Query:  448 FRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPN 621
            +RG+R+RPWG+WAAEIRDP++  R+WLGTF T +EAA  YD AA+K++G  A  NFPN
Sbjct:   50 YRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPN 107          
BLAST of FC869281 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.164e-17
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  439 RKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNPV 627
            R+++RGVR+RPWG+WAAEIRDP +  R+WLGTFD  E AA  YD+AA++ +G  A  NFP  V
Sbjct:  182 RRRYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENV 244          
The following BLAST results are available for this feature:
BLAST of FC869281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
ERF78_ARATH9.510e-1853.66Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF60_ARATH9.510e-1859.72Ethylene-responsive transcription factor ERF060 OS... [more]
RAP26_ARATH1.242e-1760.94Ethylene-responsive transcription factor RAP2-6 OS... [more]
ERF98_ARATH1.242e-1763.24Ethylene-responsive transcription factor ERF098 OS... [more]
ERF4_NICSY1.622e-1766.10Ethylene-responsive transcription factor 4 OS=Nico... [more]
EF102_ARATH3.614e-1761.76Ethylene-responsive transcription factor 5 OS=Arab... [more]
SHN3_ARATH4.720e-1761.90Ethylene-responsive transcription factor SHINE 3 O... [more]
WIN1_ARATH6.164e-1766.10Ethylene-responsive transcription factor WIN1 OS=A... [more]
ERF71_ARATH6.164e-1762.07Ethylene-responsive transcription factor ERF071 OS... [more]
ABR1_ARATH6.164e-1758.73Ethylene-responsive transcription factor ABR1 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC31010E06EF AbioticL1 Citrus clementina cDNA clone C31010E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869281 ID=FC869281; Name=FC869281; organism=Citrus clementina; type=EST; length=711bp
GGACTCCTCCCAATTTCAGTTCGCAGTTCTCTCTAGCTCTTTAATTTCTA
TTCCTTGATCACTTGCTCTCAAATCTCTTTCCCGCCAAAATCTGCTGCGG
TTTTGGCCTTGTTCATGTCTCCAAAATCCGACATGATCATCAAGTTCACT
GAACACGTGGTCACTACCGATAAGCCCATAATCAGTACTCCAGCACCTCA
AAAACTTGTTCGAATCATACTTACCGACGCTGACGCCACCGATTCTTCCA
GCGATGATGAACAAGTAATTAACCACGTTCGAAGAGTCAAACGACATGTC
AAACAAATCAACCTTAATAATCATCATCGACGACGACACCAACAGCAGCA
ACGAGGACAACAGAGCAATAAGCTTCAGCATAATAAGAAGATAAAGAGAC
ATGCGCACCAACCGCCGCCGCAAAGTGAAGTCACTCACCGGAAAAAGTTC
CGGGGAGTCCGCCGGAGACCATGGGGAAGATGGGCCGCCGAGATCCGAGA
CCCCAATCGGAGGAAACGCCTCTGGCTTGGCACTTTTGACACTCCTGAAG
AAGCTGCCTCTGTTTATGATCAAGCTGCTGTCAAGCTTAAAGGCGCTAAC
GCCGTTACAAACTTCCCCAACCCCGTTTTAACGGGAGATGATGTCGTTAA
CGGTCAACGTCAACGGACAGGCGTTGATTCGTTTGACTCCTCTGACATTA
GCTCTCTGTCG
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