FC870530

Overview
NameFC870530
Unique NameFC870530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length593
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.702e-34
Identity = 69/88 (78.41%), Postives = 80/88 (90.91%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 267
            TVRL+  ASY++IKAAIK  SEG LKGILGYTED+VVSTDF+GDS SSIFDAKAGI+L+  FVKL+SWYDNE+GYSTRVVDL+VH+AK
Sbjct:  244 TVRLEKSASYEDIKAAIKKASEGSLKGILGYTEDEVVSTDFIGDSHSSIFDAKAGISLNPNFVKLISWYDNEYGYSTRVVDLLVHIAK 331          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.702e-34
Identity = 70/90 (77.78%), Postives = 78/90 (86.67%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 273
            TVR++  ASY+EIK AIKA SEG LKGI+GY E+D+VSTDF GDSRSSIFDAKAGIAL+  F+KLVSWYDNEWGYS RVVDLI HM KTQ
Sbjct:  248 TVRIEKGASYEEIKKAIKAASEGPLKGIMGYVEEDLVSTDFTGDSRSSIFDAKAGIALNDHFIKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 8.753e-34
Identity = 70/90 (77.78%), Postives = 79/90 (87.78%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 273
            TVR++  ASY++IK AIKA SEG LKGI+GY E+D+VSTDF+GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYS RVVDLI HM KTQ
Sbjct:  248 TVRIEKGASYEDIKKAIKAASEGPLKGIMGYVEEDLVSTDFLGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.950e-33
Identity = 71/87 (81.61%), Postives = 76/87 (87.36%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 264
            T RL+  A+YDEIKAAIK  SE  LKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIAL+  FVK+VSWYDNEWGYS RV+DLI HMA
Sbjct:  247 TARLEKAATYDEIKAAIKHESETSLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEWGYSNRVIDLIRHMA 333          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.264e-32
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 264
            TV+L+   +YDEIKAAIKA SEGKLKGILGYTED VVSTDF+GD+ SSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H+A
Sbjct:  243 TVKLNKETTYDEIKAAIKAASEGKLKGILGYTEDAVVSTDFLGDNNSSIFDASAGIMLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 329          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.156e-32
Identity = 66/88 (75.00%), Postives = 77/88 (87.50%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 267
            TVR++  ASYDEIK A+K  SEG L GILGYTEDD+VSTD  GD+RSSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+V++AK
Sbjct:  245 TVRIEKGASYDEIKQAVKEASEGSLNGILGYTEDDIVSTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.816e-32
Identity = 69/90 (76.67%), Postives = 77/90 (85.56%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 273
            TVRL   A+Y++IKAAIK  SEG LKGILGY ++D+VSTDF GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYSTRVVDLI HM  T+
Sbjct:  216 TVRLAKPATYEQIKAAIKEESEGNLKGILGYVDEDLVSTDFQGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIRHMHSTK 305          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.273e-32
Identity = 65/88 (73.86%), Postives = 77/88 (87.50%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 267
            TVR++  ASYDEIK A+K  SEG L GILGYTEDD+V+TD  GD+RSSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+V++AK
Sbjct:  245 TVRIEKGASYDEIKQAVKEASEGPLSGILGYTEDDIVTTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.193e-32
Identity = 67/88 (76.14%), Postives = 75/88 (85.23%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 267
            TV+L    +YDEIK  IK  SEGKLKG+LGYTED VVS+DF+GDSRSSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H+AK
Sbjct:  244 TVKLQKETTYDEIKKVIKQASEGKLKGVLGYTEDAVVSSDFLGDSRSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.070e-31
Identity = 67/88 (76.14%), Postives = 75/88 (85.23%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 267
            TVRL    SYD+IKAA+KA SEG L+G+LGYTEDDVVS DF GD+RSSIFDAKAGI LSK FVK+VSWYDNE+GYS RV+DLI HM K
Sbjct:  242 TVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHMQK 329          
The following BLAST results are available for this feature:
BLAST of FC870530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 228
Match NameE-valueIdentityDescription
G3P_RHIMI6.702e-3478.41Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3PD_MAIZE6.702e-3477.78Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE8.753e-3477.78Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR1.950e-3381.61Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ASHGO1.264e-3279.31Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]
G3P_COCHE2.156e-3275.00Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3PC_HORVU2.816e-3276.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_CURLU6.273e-3273.86Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P2_CANGA8.193e-3276.14Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P_PANVR1.070e-3176.14Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAA3CF09ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3CF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870530 ID=FC870530; Name=FC870530; organism=Citrus clementina; type=EST; length=593bp
GGGACAGTGAGGCTGGACCCTTATGCTTCTTATGATGAAATCAAAGCTGC
CATCAAGGCGCTTTCAGAGGGGAAACTAAAGGGTATCTTGGGATACACTG
AGGATGATGTGGTATCCACCGACTTTGTTGGTGACAGTAGGTCAAGTATC
TTTGATGCCAAGGCTGGTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGT
CTCATGGTATGACAATGAGTGGGGCTACAGTACTCGTGTGGTGGATTTGA
TTGTCCACATGGCGAAAACCCAGTAACTTACTCGGCGTGGCTTGAGTATG
TAACACGCTTAGTTGTGCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGT
GTTTCTTTGCGCTAAATGTGGTGTTTGTGTTTCTATGTAGAGGGTCTGAG
TTTAAATAAAATTGTTTCCAAGACATTATCCAGAGCCTTACCTGCTCATG
CAGGGTTGTGCTTAGATTTTCCCTTGTAGTATGCAAGAAGAGTTGGTGAA
CCAACTTATGTTTTGTTAGCGAGAAAACAATTGTCTATTGGAAACTTGCT
TTTATAATTTTTCATCTAGTTAGTATCGAAGACCTGTTCTTCA
back to top