FC870530

Overview
NameFC870530
Unique NameFC870530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length593
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   34 DEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 249
            +E+ AA +  ++ +LKGIL   ++ +VS DF     SS  D+   + +    VK+++WYDNEWGYS RVVDL
Sbjct:  321 EEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 392          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3PP_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   34 DEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 264
            +E+   +KA +EG+LKGIL Y    +VS DF  +  SS FDA     ++   VK+ +WYDNEWG+S R++D  V +A
Sbjct:  258 EEVNGILKAAAEGELKGILDYNTAPLVSVDFNHNPASSTFDATL-TKVNGTLVKVSAWYDNEWGFSNRMLDTAVALA 333          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3PC_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   34 DEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 264
            +E+   +KA +EG+LKGIL Y    +VS DF  +  SS FDA     ++   VK+ +WYDNEWG+S R++D  V +A
Sbjct:  258 EEVNGILKAAAEGELKGILDYNTAPLVSVDFNHNPASSTFDATL-TKVNGTLVKVSAWYDNEWGFSNRMLDTAVALA 333          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 4.674e-11
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   34 DEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 249
            +E+ AA +  +E +LKGIL   ++ +VS DF     S+  D+   + +    VK+++WYDNEWGYS RVVDL
Sbjct:  316 EEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 387          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_XANFL (Glyceraldehyde-3-phosphate dehydrogenase OS=Xanthobacter flavus GN=gap PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 1
Query:   28 SYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 267
            S +EI  AI A +  +LKGILG+T+   VS DF  +  SS F       +    V+++SWYDNEWG+S R+ D  V M K
Sbjct:  254 SKEEINEAIIAAASQQLKGILGFTDQPNVSIDFNHNPNSSTFHLDQTKVMEGTLVRVLSWYDNEWGFSNRMSDTAVAMGK 333          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_STRPY (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes GN=gap PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 40/90 (44.44%), Postives = 52/90 (57.78%), Query Frame = 1
Query:    7 VRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDA---KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 267
            V LD   S DEI +A+KA S        GYTED +VS+D VG S  S+FDA   K       + VK+VSWYDNE  Y+ ++V  + + AK
Sbjct:  248 VTLDKNVSVDEINSAMKAASNDSF----GYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLVRTLEYFAK 333          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_HALVA (Glyceraldehyde-3-phosphate dehydrogenase OS=Haloarcula vallismortis GN=gap PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 32/87 (36.78%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    7 VRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 267
            V LD   +  ++ AA +  + G+L+G+LG T DDVVS+D +GD  S+  D ++   +S    K+++WYDNE+G+S R++D+  ++ +
Sbjct:  250 VDLDDDVTESDVNAAFEDAAAGELEGVLGVTSDDVVSSDILGDPYSTQVDLQSTNVVS-GMTKILTWYDNEYGFSNRMLDVAEYITE 335          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_CORGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Corynebacterium glutamicum GN=gap PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   34 DEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 249
            + I AAIK  + G+    L Y+E+ +VSTD V DS  SIFDA     +S   VK+VSWYDNEWGY+ +++ L
Sbjct:  256 ESINAAIKEAAVGEFGETLAYSEEPLVSTDIVHDSHGSIFDAGL-TKVSGNTVKVVSWYDNEWGYTCQLLRL 326          
The following BLAST results are available for this feature:
BLAST of FC870530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 228
Match NameE-valueIdentityDescription
G3PA_SPIOL2.740e-1143.06Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PP_RALEH3.578e-1144.16Glyceraldehyde-3-phosphate dehydrogenase, plasmid ... [more]
G3PC_RALEH3.578e-1144.16Glyceraldehyde-3-phosphate dehydrogenase, chromoso... [more]
G3PA_ARATH4.674e-1143.06Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_XANFL6.104e-1143.75Glyceraldehyde-3-phosphate dehydrogenase OS=Xantho... [more]
G3P_STRPY6.104e-1144.44Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_HALVA7.972e-1136.78Glyceraldehyde-3-phosphate dehydrogenase OS=Haloar... [more]
G3P_CORGL7.972e-1148.61Glyceraldehyde-3-phosphate dehydrogenase OS=Coryne... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAA3CF09ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3CF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870530 ID=FC870530; Name=FC870530; organism=Citrus clementina; type=EST; length=593bp
GGGACAGTGAGGCTGGACCCTTATGCTTCTTATGATGAAATCAAAGCTGC
CATCAAGGCGCTTTCAGAGGGGAAACTAAAGGGTATCTTGGGATACACTG
AGGATGATGTGGTATCCACCGACTTTGTTGGTGACAGTAGGTCAAGTATC
TTTGATGCCAAGGCTGGTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGT
CTCATGGTATGACAATGAGTGGGGCTACAGTACTCGTGTGGTGGATTTGA
TTGTCCACATGGCGAAAACCCAGTAACTTACTCGGCGTGGCTTGAGTATG
TAACACGCTTAGTTGTGCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGT
GTTTCTTTGCGCTAAATGTGGTGTTTGTGTTTCTATGTAGAGGGTCTGAG
TTTAAATAAAATTGTTTCCAAGACATTATCCAGAGCCTTACCTGCTCATG
CAGGGTTGTGCTTAGATTTTCCCTTGTAGTATGCAAGAAGAGTTGGTGAA
CCAACTTATGTTTTGTTAGCGAGAAAACAATTGTCTATTGGAAACTTGCT
TTTATAATTTTTCATCTAGTTAGTATCGAAGACCTGTTCTTCA
back to top