FC870530

Overview
NameFC870530
Unique NameFC870530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length593
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.871e-30
Identity = 61/88 (69.32%), Postives = 73/88 (82.95%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 267
            TVR++  A+YDEIK AIK  +EG LKG+L YTEDD VSTD +G+  SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DL+ H+AK
Sbjct:  245 TVRIEKGATYDEIKQAIKEAAEGPLKGVLAYTEDDFVSTDMIGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVAK 332          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.871e-30
Identity = 64/88 (72.73%), Postives = 75/88 (85.23%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 267
            TVRL+  A+Y+EIKA IK  SE +LKGILGYT D VVSTDFVGD++SSIFDA AGIAL+ KFVKLVSWYDNE+GYS RV+DL+ + AK
Sbjct:  245 TVRLEKGATYEEIKAVIKKASENELKGILGYTNDQVVSTDFVGDAQSSIFDAAAGIALNDKFVKLVSWYDNEFGYSNRVIDLLAYAAK 332          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.668e-30
Identity = 64/89 (71.91%), Postives = 74/89 (83.15%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 270
            TV L    SYDEIKAA+K  SEG +KGILGYTEDDVVS+DF+GD+ SSI DA AGI L+  FVKLVSWYDNE+GYSTRVVDL+ H+AK+
Sbjct:  244 TVNLAKETSYDEIKAALKKASEGSMKGILGYTEDDVVSSDFLGDAHSSIVDAAAGIQLTPTFVKLVSWYDNEFGYSTRVVDLVEHVAKS 332          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 7.668e-30
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 267
            T RL+   SYDEIK A+K  SE +LKGILGYTEDD+VS+D  GD  SSIFDAKAGIAL+  FVKLVSWYDNEWGYS RVVDLI +++K
Sbjct:  245 TCRLEKATSYDEIKKALKDASENELKGILGYTEDDIVSSDLNGDDHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVVDLIAYISK 332          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P3_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhizomucor racemosus GN=GPD3 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.668e-30
Identity = 67/88 (76.14%), Postives = 75/88 (85.23%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGK-LKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 264
            TVRL+  ASYDEIKA IK  SE + LKGILGYTED VVSTDFVGD+ SSIFDAKAGI LS  FVKL+SWYDNE+GYSTRVVDL+ ++A
Sbjct:  246 TVRLEKPASYDEIKATIKKASESEELKGILGYTEDQVVSTDFVGDAHSSIFDAKAGIQLSPTFVKLISWYDNEFGYSTRVVDLLAYVA 333          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_LENED (Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.001e-29
Identity = 62/86 (72.09%), Postives = 72/86 (83.72%), Query Frame = 1
Query:   10 RLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 267
            R +  A+YDEIKAA+K  S+G LKGILGYTED VVSTDF+GD+ SSIFDA AGI L+K FVKL++WYDNEWGYS RVVDL+V  AK
Sbjct:  247 RTEKSATYDEIKAAVKEASKGPLKGILGYTEDHVVSTDFIGDNHSSIFDATAGIQLNKNFVKLIAWYDNEWGYSGRVVDLLVFAAK 332          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.308e-29
Identity = 64/90 (71.11%), Postives = 72/90 (80.00%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 273
            T RL   A YD+IKAAIK  SEG +KGILGYT+D VVSTDF GD+ SSIFDA AGIAL++ FVKLVSWYDNE GYS RVVDL+ HMA  +
Sbjct:  244 TCRLQKPAKYDDIKAAIKTASEGPMKGILGYTQDQVVSTDFNGDTHSSIFDADAGIALNENFVKLVSWYDNECGYSNRVVDLVCHMASKE 333          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.308e-29
Identity = 62/87 (71.26%), Postives = 76/87 (87.36%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 264
            TV+L   A+YDEIKAA+K +SEGKLK ++GYTED VVS+DF+GD+ S+IFDA AGI LS KFVKLV+WYDNE+GYSTRVVDL+ H+A
Sbjct:  243 TVKLVKAATYDEIKAAVKKVSEGKLKDVVGYTEDAVVSSDFLGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 329          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.708e-29
Identity = 62/87 (71.26%), Postives = 74/87 (85.06%), Query Frame = 1
Query:    7 VRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 267
            VRL+  ASYD+IK  IK  SEG+LKGILGYTED+VVSTDF+G + SS+FDAKAGI L+ KFVKL+SWYDNE+GYS RV DLI ++AK
Sbjct:  246 VRLEKGASYDQIKEVIKKASEGELKGILGYTEDEVVSTDFLGSTESSVFDAKAGIPLNDKFVKLISWYDNEYGYSRRVCDLIAYVAK 332          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.231e-29
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 267
            TVR++  ASYDEIK  IK  + G LKGIL YTEDDVVSTD  GD+ SSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+ +++K
Sbjct:  246 TVRIEKAASYDEIKEVIKKAANGPLKGILAYTEDDVVSTDMNGDNHSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLHYISK 333          
The following BLAST results are available for this feature:
BLAST of FC870530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 228
Match NameE-valueIdentityDescription
G3P_COLLN5.871e-3069.32Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P2_RHIRA5.871e-3072.73Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P_ZYGRO7.668e-3071.91Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P_ASPNG7.668e-3071.59Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P3_RHIRA7.668e-3076.14Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhiz... [more]
G3P_LENED1.001e-2972.09Glyceraldehyde-3-phosphate dehydrogenase OS=Lentin... [more]
G3P_XENLA1.308e-2971.11Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu... [more]
G3P1_KLUMA1.308e-2971.26Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_CRYCU1.708e-2971.26Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_SCLSC2.231e-2970.45Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3CF09ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3CF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870530 ID=FC870530; Name=FC870530; organism=Citrus clementina; type=EST; length=593bp
GGGACAGTGAGGCTGGACCCTTATGCTTCTTATGATGAAATCAAAGCTGC
CATCAAGGCGCTTTCAGAGGGGAAACTAAAGGGTATCTTGGGATACACTG
AGGATGATGTGGTATCCACCGACTTTGTTGGTGACAGTAGGTCAAGTATC
TTTGATGCCAAGGCTGGTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGT
CTCATGGTATGACAATGAGTGGGGCTACAGTACTCGTGTGGTGGATTTGA
TTGTCCACATGGCGAAAACCCAGTAACTTACTCGGCGTGGCTTGAGTATG
TAACACGCTTAGTTGTGCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGT
GTTTCTTTGCGCTAAATGTGGTGTTTGTGTTTCTATGTAGAGGGTCTGAG
TTTAAATAAAATTGTTTCCAAGACATTATCCAGAGCCTTACCTGCTCATG
CAGGGTTGTGCTTAGATTTTCCCTTGTAGTATGCAAGAAGAGTTGGTGAA
CCAACTTATGTTTTGTTAGCGAGAAAACAATTGTCTATTGGAAACTTGCT
TTTATAATTTTTCATCTAGTTAGTATCGAAGACCTGTTCTTCA
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