FC870530

Overview
NameFC870530
Unique NameFC870530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length593
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.495e-28
Identity = 59/86 (68.60%), Postives = 72/86 (83.72%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 261
            TVRL   A+YDEIKA +   S+G +KGIL YTE++VVSTDFVGD+ SS+FDAKAGI L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  243 TVRLGKSATYDEIKAKVLEASQGPMKGILDYTEEEVVSTDFVGDTHSSVFDAKAGIPLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.177e-28
Identity = 59/87 (67.82%), Postives = 76/87 (87.36%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 264
            TV+L   A+YDEIKAA+K  +EG LKG++GYTED VVS+DF+ D+RSSIFDA+AGI LS +FVKL++WYDNE+GYSTRVVDL+ ++A
Sbjct:  245 TVKLLKDATYDEIKAAVKEAAEGPLKGVVGYTEDQVVSSDFLTDNRSSIFDAEAGIWLSPRFVKLIAWYDNEYGYSTRVVDLLEYVA 331          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 7.177e-28
Identity = 58/86 (67.44%), Postives = 73/86 (84.88%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 261
            TVRL   ASYDEIKA ++  + G LKGILGYT+++VVSTDF+ D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  243 TVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 7.177e-28
Identity = 58/86 (67.44%), Postives = 73/86 (84.88%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 261
            TVRL   ASYDEIKA ++  + G LKGILGYT+++VVSTDF+ D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  243 TVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 9.373e-28
Identity = 61/90 (67.78%), Postives = 70/90 (77.78%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 273
            T RL+  A YD+IK  +KA ++G LKGIL YTED VVS DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHMA  +
Sbjct:  244 TCRLEKPAKYDDIKRVVKAAADGPLKGILAYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEYGYSNRVVDLMVHMASKE 333          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 9.373e-28
Identity = 58/86 (67.44%), Postives = 73/86 (84.88%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 261
            TVRL   A+YDEIKA ++  S+G LKGILGYT+++VVSTDF  D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  243 TVRLGKGATYDEIKAKVEEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_SHEEP (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Ovis aries GN=GAPDH PE=2 SV=4)

HSP 1 Score: 122.865 bits (307), Expect = 1.224e-27
Identity = 61/90 (67.78%), Postives = 69/90 (76.67%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 273
            T RL+  A YDEIK  +K  SEG LKGILGYTED VVS DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHMA  +
Sbjct:  233 TCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 322          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 122.865 bits (307), Expect = 1.224e-27
Identity = 61/90 (67.78%), Postives = 69/90 (76.67%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 273
            T RL+  A YDEIK  +K  SEG LKGILGYTED VVS DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHMA  +
Sbjct:  244 TCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.224e-27
Identity = 60/88 (68.18%), Postives = 74/88 (84.09%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 267
            TV+L   A+Y+EIKA +K  SE +LKG++GYTED VVS+DF+GD+ SSIFDA AGI LS +FVKLVSWYDNE+GYSTRVVDL+  +AK
Sbjct:  243 TVKLAKPATYEEIKAVVKKASENELKGVMGYTEDAVVSSDFLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAK 330          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.224e-27
Identity = 57/88 (64.77%), Postives = 72/88 (81.82%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 267
            TVR++  ASY+EI   IK  ++G LKG+L YT DDVVS+D +G++ SSIFD KAGI+L+K FVKLVSWYDNEWGYS RV+DL+ H+AK
Sbjct:  246 TVRIEKGASYEEITETIKKAADGPLKGVLAYTGDDVVSSDMLGNTNSSIFDIKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLAHVAK 333          
The following BLAST results are available for this feature:
BLAST of FC870530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 228
Match NameE-valueIdentityDescription
G3P_GLOMM5.495e-2868.60Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]
G3P_PICCI7.177e-2867.82Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P2_DROPS7.177e-2867.44Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P2_DROME7.177e-2867.44Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P_COLLI9.373e-2867.78Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]
G3P1_DROME9.373e-2867.44Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P_SHEEP1.224e-2767.78Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_BOVIN1.224e-2767.78Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]
G3P3_KLUMA1.224e-2768.18Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P2_TRIKO1.224e-2764.77Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3CF09ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3CF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870530 ID=FC870530; Name=FC870530; organism=Citrus clementina; type=EST; length=593bp
GGGACAGTGAGGCTGGACCCTTATGCTTCTTATGATGAAATCAAAGCTGC
CATCAAGGCGCTTTCAGAGGGGAAACTAAAGGGTATCTTGGGATACACTG
AGGATGATGTGGTATCCACCGACTTTGTTGGTGACAGTAGGTCAAGTATC
TTTGATGCCAAGGCTGGTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGT
CTCATGGTATGACAATGAGTGGGGCTACAGTACTCGTGTGGTGGATTTGA
TTGTCCACATGGCGAAAACCCAGTAACTTACTCGGCGTGGCTTGAGTATG
TAACACGCTTAGTTGTGCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGT
GTTTCTTTGCGCTAAATGTGGTGTTTGTGTTTCTATGTAGAGGGTCTGAG
TTTAAATAAAATTGTTTCCAAGACATTATCCAGAGCCTTACCTGCTCATG
CAGGGTTGTGCTTAGATTTTCCCTTGTAGTATGCAAGAAGAGTTGGTGAA
CCAACTTATGTTTTGTTAGCGAGAAAACAATTGTCTATTGGAAACTTGCT
TTTATAATTTTTCATCTAGTTAGTATCGAAGACCTGTTCTTCA
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