FC870695
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_CORU7 (50S ribosomal protein L19 OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=rplS PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.383e-12 Identity = 40/112 (35.71%), Postives = 67/112 (59.82%), Query Frame = 2 Query: 215 MGILNKRAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 547 M IL+K ++A++ IP+ R GD V++ L+V E ++ R+ +++G+V+ RQ VE P++SPNI +++V+S KVRRA+LYYLRD+ + + K Sbjct: 1 MHILDK--VDAAQLRDDIPEFRAGDTVDVHLKVIEGSKSRVQVFRGVVIKRQGSGIRETFTVRKVSFGIGVERTIPVHSPNIDKLEVLSRGKVRRAKLYYLRDRHGKAAKIK 110
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_BEII9 (50S ribosomal protein L19 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplS PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.383e-12 Identity = 39/91 (42.86%), Postives = 53/91 (58.24%), Query Frame = 2 Query: 254 SERPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 523 ++RPIP + GD V + ++V E R R+ Y+G+ ++R VE VFP+YSPNI IKVV KVRRA+LYYLRD+ Sbjct: 17 AKRPIPAFQPGDTVIVNVKVKEGERTRVQAYEGVCIARNGGGLNESFTVRKISYGEGVERVFPIYSPNIDSIKVVRRGKVRRAKLYYLRDR 107
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_CYAP4 (50S ribosomal protein L19 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplS PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.806e-12 Identity = 38/108 (35.19%), Postives = 64/108 (59.26%), Query Frame = 2 Query: 233 RAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK*R 553 R++EA + + +P+I GD V++ + + E N+ R Y+GIV++++N VE VF L+SP ++ IK++ KVRRA+LYYLRD++ + + K R Sbjct: 8 RSLEAEQLKSNLPEIHVGDTVKVGVIIQEGNKERTQPYEGIVIAKRNSGINATITVRRIFQGVGVERVFLLHSPRVESIKIIKRGKVRRAKLYYLRDRVGKATRVKQR 115
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_LACLA (50S ribosomal protein L19 OS=Lactococcus lactis subsp. lactis GN=rplS PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12 Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 2 Query: 236 AIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 517 +I A++ IPD R GD V + +V E R R+ +++G+V++R+N VE +FP+++P +++I+V+ H KVRRA+LYYLR Sbjct: 6 SINAAQLRTDIPDFRPGDTVRVHAKVVEGTRERIQMFEGVVIARKNSGINETYTVRKISNGVGVERIFPVHTPRVEQIEVIRHGKVRRAKLYYLR 100
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_CLOBM (50S ribosomal protein L19 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplS PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12 Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 2 Query: 233 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK*R 553 +AIEA + +P+ GD V++ ++ E R R+ I++G V+ RQN VE FP+ SP I++I+VV KVRRA+LYYLRD++ + + K R Sbjct: 6 KAIEAEQVRNDLPEFHVGDTVKVHQKIKEGTRERVQIFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRDRVGKAAKVKER 113
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_CALS8 (50S ribosomal protein L19 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplS PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12 Identity = 38/106 (35.85%), Postives = 60/106 (56.60%), Query Frame = 2 Query: 233 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 547 R IE+ + IPD + GD V + +V E R R+ ++G+V+ R+ VE VFPL+SP I++I+V+ KVRRA+LYY+R+K+ + + K Sbjct: 5 REIESEMLRKDIPDFKPGDTVRVHFKVIEGGRERIQAFEGLVIKRRGKGLSETFTVRRISYGVGVERVFPLHSPRIEKIEVIRRGKVRRAKLYYIREKIGKAAKIK 110
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_NOVAD (50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplS PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.081e-12 Identity = 41/101 (40.59%), Postives = 54/101 (53.47%), Query Frame = 2 Query: 224 LNKRAIEASESERPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 523 L AI ++++ IPD R GD V + + V E R R+ Y+G+ ++R N VE VFPLYSPNI I VV VRRA+LYYLR + Sbjct: 7 LEAEAIAEFKAKKEIPDFRAGDTVRVGVRVVEGERTRVQAYEGVCIARSNRGLGSNFTVRKISFGEGVERVFPLYSPNIDSITVVRRGVVRRAKLYYLRGR 107
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_CLOBL (50S ribosomal protein L19 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplS PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12 Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 2 Query: 233 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK*R 553 +AIEA + +P+ GD V++ ++ E R R+ +++G V+ RQN VE FP+ SP I++I+VV KVRRA+LYYLRD++ + + K R Sbjct: 6 KAIEAEQVRSDLPEFNVGDTVKVHQKIKEGTRERVQVFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRDRVGKAAKVKER 113
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_CLOBK (50S ribosomal protein L19 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplS PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12 Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 2 Query: 233 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK*R 553 +AIEA + +P+ GD V++ ++ E R R+ +++G V+ RQN VE FP+ SP I++I+VV KVRRA+LYYLRD++ + + K R Sbjct: 6 KAIEAEQVRSDLPEFNVGDTVKVHQKIKEGTRERVQVFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRDRVGKAAKVKER 113
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_CLOBJ (50S ribosomal protein L19 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplS PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12 Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 2 Query: 233 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK*R 553 +AIEA + +P+ GD V++ ++ E R R+ +++G V+ RQN VE FP+ SP I++I+VV KVRRA+LYYLRD++ + + K R Sbjct: 6 KAIEAEQVRSDLPEFNVGDTVKVHQKIKEGTRERVQVFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRDRVGKAAKVKER 113 The following BLAST results are available for this feature:
BLAST of FC870695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >FC870695 ID=FC870695; Name=FC870695; organism=Citrus clementina; type=EST; length=773bpback to top |