FC870695

Overview
NameFC870695
Unique NameFC870695
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length773
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_CORU7 (50S ribosomal protein L19 OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.383e-12
Identity = 40/112 (35.71%), Postives = 67/112 (59.82%), Query Frame = 2
Query:  215 MGILNKRAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 547
            M IL+K  ++A++    IP+ R GD V++ L+V E ++ R+ +++G+V+ RQ                  VE   P++SPNI +++V+S  KVRRA+LYYLRD+  + +  K
Sbjct:    1 MHILDK--VDAAQLRDDIPEFRAGDTVDVHLKVIEGSKSRVQVFRGVVIKRQGSGIRETFTVRKVSFGIGVERTIPVHSPNIDKLEVLSRGKVRRAKLYYLRDRHGKAAKIK 110          
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_BEII9 (50S ribosomal protein L19 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.383e-12
Identity = 39/91 (42.86%), Postives = 53/91 (58.24%), Query Frame = 2
Query:  254 SERPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 523
            ++RPIP  + GD V + ++V E  R R+  Y+G+ ++R                   VE VFP+YSPNI  IKVV   KVRRA+LYYLRD+
Sbjct:   17 AKRPIPAFQPGDTVIVNVKVKEGERTRVQAYEGVCIARNGGGLNESFTVRKISYGEGVERVFPIYSPNIDSIKVVRRGKVRRAKLYYLRDR 107          
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_CYAP4 (50S ribosomal protein L19 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.806e-12
Identity = 38/108 (35.19%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  233 RAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK*R 553
            R++EA + +  +P+I  GD V++ + + E N+ R   Y+GIV++++N                 VE VF L+SP ++ IK++   KVRRA+LYYLRD++ + +  K R
Sbjct:    8 RSLEAEQLKSNLPEIHVGDTVKVGVIIQEGNKERTQPYEGIVIAKRNSGINATITVRRIFQGVGVERVFLLHSPRVESIKIIKRGKVRRAKLYYLRDRVGKATRVKQR 115          
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_LACLA (50S ribosomal protein L19 OS=Lactococcus lactis subsp. lactis GN=rplS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  236 AIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 517
            +I A++    IPD R GD V +  +V E  R R+ +++G+V++R+N                 VE +FP+++P +++I+V+ H KVRRA+LYYLR
Sbjct:    6 SINAAQLRTDIPDFRPGDTVRVHAKVVEGTRERIQMFEGVVIARKNSGINETYTVRKISNGVGVERIFPVHTPRVEQIEVIRHGKVRRAKLYYLR 100          
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_CLOBM (50S ribosomal protein L19 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  233 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK*R 553
            +AIEA +    +P+   GD V++  ++ E  R R+ I++G V+ RQN                 VE  FP+ SP I++I+VV   KVRRA+LYYLRD++ + +  K R
Sbjct:    6 KAIEAEQVRNDLPEFHVGDTVKVHQKIKEGTRERVQIFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRDRVGKAAKVKER 113          
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_CALS8 (50S ribosomal protein L19 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12
Identity = 38/106 (35.85%), Postives = 60/106 (56.60%), Query Frame = 2
Query:  233 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 547
            R IE+    + IPD + GD V +  +V E  R R+  ++G+V+ R+                  VE VFPL+SP I++I+V+   KVRRA+LYY+R+K+ + +  K
Sbjct:    5 REIESEMLRKDIPDFKPGDTVRVHFKVIEGGRERIQAFEGLVIKRRGKGLSETFTVRRISYGVGVERVFPLHSPRIEKIEVIRRGKVRRAKLYYIREKIGKAAKIK 110          
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_NOVAD (50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.081e-12
Identity = 41/101 (40.59%), Postives = 54/101 (53.47%), Query Frame = 2
Query:  224 LNKRAIEASESERPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 523
            L   AI   ++++ IPD R GD V + + V E  R R+  Y+G+ ++R N                 VE VFPLYSPNI  I VV    VRRA+LYYLR +
Sbjct:    7 LEAEAIAEFKAKKEIPDFRAGDTVRVGVRVVEGERTRVQAYEGVCIARSNRGLGSNFTVRKISFGEGVERVFPLYSPNIDSITVVRRGVVRRAKLYYLRGR 107          
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_CLOBL (50S ribosomal protein L19 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12
Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  233 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK*R 553
            +AIEA +    +P+   GD V++  ++ E  R R+ +++G V+ RQN                 VE  FP+ SP I++I+VV   KVRRA+LYYLRD++ + +  K R
Sbjct:    6 KAIEAEQVRSDLPEFNVGDTVKVHQKIKEGTRERVQVFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRDRVGKAAKVKER 113          
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_CLOBK (50S ribosomal protein L19 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12
Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  233 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK*R 553
            +AIEA +    +P+   GD V++  ++ E  R R+ +++G V+ RQN                 VE  FP+ SP I++I+VV   KVRRA+LYYLRD++ + +  K R
Sbjct:    6 KAIEAEQVRSDLPEFNVGDTVKVHQKIKEGTRERVQVFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRDRVGKAAKVKER 113          
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_CLOBJ (50S ribosomal protein L19 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12
Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  233 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK*R 553
            +AIEA +    +P+   GD V++  ++ E  R R+ +++G V+ RQN                 VE  FP+ SP I++I+VV   KVRRA+LYYLRD++ + +  K R
Sbjct:    6 KAIEAEQVRSDLPEFNVGDTVKVHQKIKEGTRERVQVFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRDRVGKAAKVKER 113          
The following BLAST results are available for this feature:
BLAST of FC870695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RL19_CORU71.383e-1235.7150S ribosomal protein L19 OS=Corynebacterium ureal... [more]
RL19_BEII91.383e-1242.8650S ribosomal protein L19 OS=Beijerinckia indica s... [more]
RL19_CYAP41.806e-1235.1950S ribosomal protein L19 OS=Cyanothece sp. (strai... [more]
RL19_LACLA2.359e-1236.8450S ribosomal protein L19 OS=Lactococcus lactis su... [more]
RL19_CLOBM2.359e-1237.0450S ribosomal protein L19 OS=Clostridium botulinum... [more]
RL19_CALS82.359e-1235.8550S ribosomal protein L19 OS=Caldicellulosiruptor ... [more]
RL19_NOVAD3.081e-1240.5950S ribosomal protein L19 OS=Novosphingobium aroma... [more]
RL19_CLOBL4.024e-1236.1150S ribosomal protein L19 OS=Clostridium botulinum... [more]
RL19_CLOBK4.024e-1236.1150S ribosomal protein L19 OS=Clostridium botulinum... [more]
RL19_CLOBJ4.024e-1236.1150S ribosomal protein L19 OS=Clostridium botulinum... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3DG11ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3DG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870695 ID=FC870695; Name=FC870695; organism=Citrus clementina; type=EST; length=773bp
GGGGGTCTCAGCGTCGCCATGGGCTCCCAGGTTCTTCCTCAGGGCGGAGT
CAAACGAAGAAGCGGAAGCGAATGAGAGTATTGAAGAGGAGCAAAACGAG
GCCGTTCAAGCACAAGGTGATGTTGTGGTAGCTGTAGAAGCTGAATCTGA
GGATAAGGTTGAAGAAGAAGAAGTGAAAGCACCCAGAAAGCCCAGGGTTA
AACTTGGAGATATCATGGGGATATTGAATAAGAGGGCGATTGAGGCATCG
GAGAGTGAAAGACCAATTCCAGATATTAGGACGGGTGATGTTGTGGAGAT
TAAATTGGAAGTTCCTGAAAATAGGCGTAGGTTGTCCATTTACAAAGGTA
TTGTTATGTCAAGGCAAAATGCTGGGATCCACACTACAATTCGAATTCGG
AGGATTATTGCTGGCATAGGGGTTGAGATCGTATTCCCTCTTTATTCGCC
AAACATCAAGGAGATAAAAGTTGTCTCCCACAGGAAAGTGAGGAGGGCAA
GGCTGTACTATCTTAGAGACAAGCTTCCTAGACTCTCCACTTTCAAATGA
AGAAGCCCGATGCTGCTGTTCTTCAGTTGATTTTGCCTTCAAAGTGGTTT
TCAGAATCCTAAAATGTTGTAAAAGCTGTAATTTAATATCCCATTTTATC
ATTTTTCCTTTCCTTTCTTTCCTTTTATTTTAGTCGTGGAAATTATTGTA
TCTTTAGATGATTACATGAGCTTTAGCAGCTTCAGATTACGATTCCATCT
AAAAAAAAAAAAAAAAAAAAAAA
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