FC870700

Overview
NameFC870700
Unique NameFC870700
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870700 vs. ExPASy Swiss-Prot
Match: ARF3_TAKRU (ADP-ribosylation factor 3 OS=Takifugu rubripes GN=arf3 PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.961e-22
Identity = 54/170 (31.76%), Postives = 94/170 (55.29%), Query Frame = 1
Query:   88 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 597
            F N L+SL  K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   +++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L++  L    LLV  NK D P A++  ++ +++GL S+  R          +   +   +DWL
Sbjct:    5 FGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173          
BLAST of FC870700 vs. ExPASy Swiss-Prot
Match: ARF3_RAT (ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.961e-22
Identity = 54/170 (31.76%), Postives = 94/170 (55.29%), Query Frame = 1
Query:   88 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 597
            F N L+SL  K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   +++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L++  L    LLV  NK D P A++  ++ +++GL S+  R          +   +   +DWL
Sbjct:    5 FGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173          
BLAST of FC870700 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 3.961e-22
Identity = 54/170 (31.76%), Postives = 94/170 (55.29%), Query Frame = 1
Query:   88 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 597
            F N L+SL  K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   +++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L++  L    LLV  NK D P A++  ++ +++GL S+  R          +   +   +DWL
Sbjct:    5 FGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173          
BLAST of FC870700 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.961e-22
Identity = 54/170 (31.76%), Postives = 94/170 (55.29%), Query Frame = 1
Query:   88 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 597
            F N L+SL  K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   +++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L++  L    LLV  NK D P A++  ++ +++GL S+  R          +   +   +DWL
Sbjct:    5 FGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173          
BLAST of FC870700 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.961e-22
Identity = 54/170 (31.76%), Postives = 94/170 (55.29%), Query Frame = 1
Query:   88 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 597
            F N L+SL  K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   +++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L++  L    LLV  NK D P A++  ++ +++GL S+  R          +   +   +DWL
Sbjct:    5 FGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173          
BLAST of FC870700 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 3.961e-22
Identity = 54/170 (31.76%), Postives = 94/170 (55.29%), Query Frame = 1
Query:   88 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 597
            F N L+SL  K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   +++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L++  L    LLV  NK D P A++  ++ +++GL S+  R          +   +   +DWL
Sbjct:    5 FGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173          
BLAST of FC870700 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 3.961e-22
Identity = 56/176 (31.82%), Postives = 96/176 (54.55%), Query Frame = 1
Query:   70 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 597
            MGL+ + L    +LF  +EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   +++  +WD+GGQ R RS+W  Y R    +++V+D+ D   +  +R  +  +L++  L     LV  NK D PEA+S  ++ E++GL SI +R          +   +   ++WL
Sbjct:    1 MGLYASKL--FSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWL 173          
BLAST of FC870700 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 5.173e-22
Identity = 53/166 (31.93%), Postives = 91/166 (54.82%), Query Frame = 1
Query:  100 LRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 597
            L  LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   +++  +WD+GGQ + R +W  Y +    I++VVD+ D + +  +R EL  +LS+  L    LLV  NK D P A++  ++ +++GL S+  R          +   +   ++WL
Sbjct:    9 LNGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRQRSWYIQAACATSGDGLYEGLEWL 173          
BLAST of FC870700 vs. ExPASy Swiss-Prot
Match: ARF_AJECA (ADP-ribosylation factor OS=Ajellomyces capsulata GN=ARF PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 5.173e-22
Identity = 55/171 (32.16%), Postives = 92/171 (53.80%), Query Frame = 1
Query:   85 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 597
            AF      ++ K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   ++   +WD+GGQ + R +W  Y +    I++VVD+ D D +  +R EL  +L++  L    LLV  NK D P A+S  ++ +Q+GL+S+T R              +   ++WL
Sbjct:    4 AFSKLFDRIWGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNAMSPAEITQQLGLQSLTRRAWYIQSTCATTGDGLYEGLEWL 173          
BLAST of FC870700 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.757e-22
Identity = 50/141 (35.46%), Postives = 81/141 (57.45%), Query Frame = 1
Query:  109 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 531
            +F  +EM + + GL  AGKT+++  +  G  S   IPTVGFN+  VT  +V   +WD+GGQ + R +W  Y      +++VVD  D D +  +R ELH +++   +    +L+  NK D P+A+   ++ E++GL  I DR
Sbjct:    8 IFGNKEMRILMRGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
The following BLAST results are available for this feature:
BLAST of FC870700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
ARF3_TAKRU3.961e-2231.76ADP-ribosylation factor 3 OS=Takifugu rubripes GN=... [more]
ARF3_RAT3.961e-2231.76ADP-ribosylation factor 3 OS=Rattus norvegicus GN=... [more]
ARF3_PONAB3.961e-2231.76ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ... [more]
ARF3_MOUSE3.961e-2231.76ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ... [more]
ARF3_HUMAN3.961e-2231.76ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
ARF3_BOVIN3.961e-2231.76ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARF2_YEAST3.961e-2231.82ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF_CRYNE5.173e-2231.93ADP-ribosylation factor OS=Cryptococcus neoformans... [more]
ARF_AJECA5.173e-2232.16ADP-ribosylation factor OS=Ajellomyces capsulata G... [more]
ARF6_XENLA6.757e-2235.46ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3DH06ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3DH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870700 ID=FC870700; Name=FC870700; organism=Citrus clementina; type=EST; length=866bp
GCGGGGGCTTTTTCCCAGCTTTTATACTTCAAAGGCGAAACCCTAGCTTC
TTATTTTGTCGAATAAAAGATGGGATTATGGGAAGCTTTTCTCAACTGGC
TTCGAAGTCTCTTCTTTAAACAAGAAATGGAGCTATCTTTGATAGGGCTT
CAGAATGCAGGCAAGACGTCCCTTGTGAATGTTATTGCAACTGGTGGATA
TAGTGAAGATATGATCCCAACAGTAGGATTTAATATGAGGAAAGTGACTA
AGGGGAGTGTCACAATAAAGCTGTGGGATCTTGGAGGCCAACCACGGTTT
CGCAGTATGTGGGAGAGATACTGTCGTGCAGTTTCAGCTATTGTTTACGT
TGTTGATGCTGCTGATTATGATAACTTGCCTGTGTCAAGAAGTGAACTCC
ATGACTTGTTAAGTAAACCCTCGCTGAATGGTATCCCATTGCTGGTGCTG
GGAAACAAGATTGATAAACCAGAAGCCTTGTCTAAAGAGGATCTGATGGA
ACAAATGGGGCTGAAGTCCATTACCGATAGAGAAGTTTGTTGCTACATGA
TTTCATGCAAAAACTCTACCAACATTGACACGGTTATTGATTGGCTTGTA
AAGCATTCAAAATCAAAGAGTTGAGTTTCTTCCTGTAGTTTTGAACTACA
TGGGAGCCTGTTTTCAACAACTGATTCAGGATGATTTGAGTGAGCCGTAC
TGTTAGTCTGCTCGGGTCAGTCGATGTGTGATCATAGTTTTTTATTTCGA
CTTGGCTTTTTATCGTAAATCATAATTTGTTTAGTTTTACATCAGGAATC
TGGGAACACCCATGTATTAATTGCTGAGATACCAAGTGATCATACTTTCA
TGTATAGATCTAATAT
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