FC870700

Overview
NameFC870700
Unique NameFC870700
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870700 vs. ExPASy Swiss-Prot
Match: ARL3_TAEGU (ADP-ribosylation factor-like protein 3 OS=Taeniopygia guttata GN=ARL3 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.757e-21
Identity = 51/159 (32.08%), Postives = 85/159 (53.46%), Query Frame = 1
Query:  121 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 597
            QE+ + L+GL NAGKT+L+  +A+   S  + PT GFN++ V      + +WD+GGQ + R  W  Y      ++YV+D+AD      +  EL +LL +  L+G+P+L+  NK D   A    ++ E + L +I DR       S  +   +   ++W+
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALSGEGVQDGMNWV 173          
BLAST of FC870700 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.274e-20
Identity = 54/172 (31.40%), Postives = 96/172 (55.81%), Query Frame = 1
Query:   85 AFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 597
            +F + + SLF  K+E  + +IGL  AGK++L+  +  G      IPT+GFN+  +   ++++ +WD+GGQ + R +W+ Y    +A+++VVD+ D + +   + E+ +LL +  L G  +LV  NK D   A++  +++  + L SI DR+      S   S  I    DW+
Sbjct:   11 SFFSNIFSLFEGKKETRILMIGLDGAGKSTLLYKLKLGDVVST-IPTIGFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDRKWYVQPCSAIRSDGIYEGFDWV 181          
BLAST of FC870700 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.274e-20
Identity = 50/163 (30.67%), Postives = 87/163 (53.37%), Query Frame = 1
Query:  109 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 597
            +F K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   ++   +WD+GGQ + R +W  Y +    +++VVD+ D + +  S  EL  +L +  L    LLV  NK D P A+   +L +++GL+++  R            T +   +DWL
Sbjct:   12 IFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAEELQKMLQEDELRDAVLLVFANKQDMPNAMVVSELTDKLGLQALRSRTWYVQATCATQGTGLYDGLDWL 173          
BLAST of FC870700 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFA (ADP-ribosylation factor 1 OS=Plasmodium falciparum GN=ARF1 PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.274e-20
Identity = 53/176 (30.11%), Postives = 94/176 (53.41%), Query Frame = 1
Query:   70 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 597
            MGL+ + L     LF K+++ + ++GL  AGKT+++  +  G      IPT+GFN+  V   +++  +WD+GGQ + R +W  Y      +++VVD+ D + +  +R ELH ++++  L    +LV  NK D P A+S  ++ E++ L +I +R              +    DWL
Sbjct:    1 MGLYVSRL--FNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTT-IPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWL 173          
BLAST of FC870700 vs. ExPASy Swiss-Prot
Match: ARL11_HUMAN (ADP-ribosylation factor-like protein 11 OS=Homo sapiens GN=ARL11 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.664e-20
Identity = 54/152 (35.53%), Postives = 88/152 (57.89%), Query Frame = 1
Query:  118 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV-TKGSVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 570
            K E ++ ++GL +AGKT+L+  +  G    + +PTVGFN+  +   G V++ LWD+GGQ   R+ W+ Y      +VYV+D+ D   LP S +EL ++L+ P++ G+P LVL NK + P+AL    +  ++ L+   D   C  +  C   T
Sbjct:   10 KAEAQVVMMGLDSAGKTTLLYKLK-GHQLVETLPTVGFNVEPLKAPGHVSLTLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGVPFLVLANKQEAPDALPLLKIRNRLSLERFQDH--CWELRGCSALT 158          
BLAST of FC870700 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.664e-20
Identity = 54/175 (30.86%), Postives = 101/175 (57.71%), Query Frame = 1
Query:   85 AFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC---KNSTNIDTVIDWL 597
            +F + + SLF  K++  + +IGL  AGK++L+  +  G      +PT+GFN+  +   ++++ +WD+GGQ + R++W+ Y    +AI++VVD+ D + +   + E+  LL +  L GI +L+  NK D   A++  ++++ + L SI DR+   Y+  C   K+   I    DW+
Sbjct:   11 SFFSNIFSLFEGKKQTRILMIGLDGAGKSTLLYKLKLGDIVST-VPTIGFNVETIEYKNLSMTVWDVGGQYKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDTLLIQEELKGIQILIFANKQDMNNAMNTSEIVDSLNLNSIKDRK--WYVQPCSAIKSPHGIYEGFDWV 182          
BLAST of FC870700 vs. ExPASy Swiss-Prot
Match: ARF5_RAT (ADP-ribosylation factor 5 OS=Rattus norvegicus GN=Arf5 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.664e-20
Identity = 50/163 (30.67%), Postives = 86/163 (52.76%), Query Frame = 1
Query:  109 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 597
            +F K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   ++   +WD+GGQ + R +W  Y +    +++VVD+ D + +  S  EL  +L +  L    LLV  NK D P A+   +L +++GL+ +  R            T +   +DWL
Sbjct:   12 IFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 173          
BLAST of FC870700 vs. ExPASy Swiss-Prot
Match: ARF5_MOUSE (ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.664e-20
Identity = 50/163 (30.67%), Postives = 86/163 (52.76%), Query Frame = 1
Query:  109 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 597
            +F K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   ++   +WD+GGQ + R +W  Y +    +++VVD+ D + +  S  EL  +L +  L    LLV  NK D P A+   +L +++GL+ +  R            T +   +DWL
Sbjct:   12 IFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 173          
BLAST of FC870700 vs. ExPASy Swiss-Prot
Match: ARF5_HUMAN (ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.664e-20
Identity = 50/163 (30.67%), Postives = 86/163 (52.76%), Query Frame = 1
Query:  109 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 597
            +F K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   ++   +WD+GGQ + R +W  Y +    +++VVD+ D + +  S  EL  +L +  L    LLV  NK D P A+   +L +++GL+ +  R            T +   +DWL
Sbjct:   12 IFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 173          
BLAST of FC870700 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.664e-20
Identity = 49/163 (30.06%), Postives = 88/163 (53.99%), Query Frame = 1
Query:  109 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 597
            LF K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   ++   +WD+GGQ + R +W  Y +    +++VVD+ D + +     EL  +L +  L    LL+  NK D P A++  ++ +++GL+S+ +R            T +   +DWL
Sbjct:   12 LFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWL 173          
The following BLAST results are available for this feature:
BLAST of FC870700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
ARL3_TAEGU9.757e-2132.08ADP-ribosylation factor-like protein 3 OS=Taeniopy... [more]
ARFJ_DICDI1.274e-2031.40ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARF5_CHICK1.274e-2030.67ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARF1_PLAFA1.274e-2030.11ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARL11_HUMAN1.664e-2035.53ADP-ribosylation factor-like protein 11 OS=Homo sa... [more]
ARFH_DICDI1.664e-2030.86ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARF5_RAT1.664e-2030.67ADP-ribosylation factor 5 OS=Rattus norvegicus GN=... [more]
ARF5_MOUSE1.664e-2030.67ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 ... [more]
ARF5_HUMAN1.664e-2030.67ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 ... [more]
ARF4_BOVIN1.664e-2030.06ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3DH06ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3DH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870700 ID=FC870700; Name=FC870700; organism=Citrus clementina; type=EST; length=866bp
GCGGGGGCTTTTTCCCAGCTTTTATACTTCAAAGGCGAAACCCTAGCTTC
TTATTTTGTCGAATAAAAGATGGGATTATGGGAAGCTTTTCTCAACTGGC
TTCGAAGTCTCTTCTTTAAACAAGAAATGGAGCTATCTTTGATAGGGCTT
CAGAATGCAGGCAAGACGTCCCTTGTGAATGTTATTGCAACTGGTGGATA
TAGTGAAGATATGATCCCAACAGTAGGATTTAATATGAGGAAAGTGACTA
AGGGGAGTGTCACAATAAAGCTGTGGGATCTTGGAGGCCAACCACGGTTT
CGCAGTATGTGGGAGAGATACTGTCGTGCAGTTTCAGCTATTGTTTACGT
TGTTGATGCTGCTGATTATGATAACTTGCCTGTGTCAAGAAGTGAACTCC
ATGACTTGTTAAGTAAACCCTCGCTGAATGGTATCCCATTGCTGGTGCTG
GGAAACAAGATTGATAAACCAGAAGCCTTGTCTAAAGAGGATCTGATGGA
ACAAATGGGGCTGAAGTCCATTACCGATAGAGAAGTTTGTTGCTACATGA
TTTCATGCAAAAACTCTACCAACATTGACACGGTTATTGATTGGCTTGTA
AAGCATTCAAAATCAAAGAGTTGAGTTTCTTCCTGTAGTTTTGAACTACA
TGGGAGCCTGTTTTCAACAACTGATTCAGGATGATTTGAGTGAGCCGTAC
TGTTAGTCTGCTCGGGTCAGTCGATGTGTGATCATAGTTTTTTATTTCGA
CTTGGCTTTTTATCGTAAATCATAATTTGTTTAGTTTTACATCAGGAATC
TGGGAACACCCATGTATTAATTGCTGAGATACCAAGTGATCATACTTTCA
TGTATAGATCTAATAT
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