FC870924

Overview
NameFC870924
Unique NameFC870924
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC870924 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 293.508 bits (750), Expect = 7.998e-79
Identity = 145/158 (91.77%), Postives = 150/158 (94.94%), Query Frame = 1 
Query:    4 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVRDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*SC 477
            AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+ EAR+EL RML EDELRDAVLLVFANKQDLPNAM+AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN I N+  +C
Sbjct:   27 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQIRNQKANC 184
[Close]
BLAST of FC870924 vs. ExPASy Swiss-Prot
Match: ARF3_TAKRU (ADP-ribosylation factor 3 OS=Takifugu rubripes GN=arf3 PE=3 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.412e-75
Identity = 138/154 (89.61%), Postives = 147/154 (95.45%), Query Frame = 1 
Query:    4 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVRDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 465
            AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLLVFANKQDLPNAM+AAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:   27 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of FC870924 vs. ExPASy Swiss-Prot
Match: ARF3_RAT (ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.412e-75
Identity = 138/154 (89.61%), Postives = 147/154 (95.45%), Query Frame = 1 
Query:    4 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVRDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 465
            AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLLVFANKQDLPNAM+AAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:   27 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of FC870924 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 282.722 bits (722), Expect = 1.412e-75
Identity = 138/154 (89.61%), Postives = 147/154 (95.45%), Query Frame = 1 
Query:    4 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVRDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 465
            AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLLVFANKQDLPNAM+AAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:   27 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of FC870924 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.412e-75
Identity = 138/154 (89.61%), Postives = 147/154 (95.45%), Query Frame = 1 
Query:    4 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVRDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 465
            AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLLVFANKQDLPNAM+AAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:   27 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of FC870924 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.412e-75
Identity = 138/154 (89.61%), Postives = 147/154 (95.45%), Query Frame = 1 
Query:    4 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVRDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 465
            AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLLVFANKQDLPNAM+AAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:   27 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of FC870924 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 282.722 bits (722), Expect = 1.412e-75
Identity = 138/154 (89.61%), Postives = 147/154 (95.45%), Query Frame = 1 
Query:    4 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVRDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 465
            AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLLVFANKQDLPNAM+AAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:   27 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of FC870924 vs. ExPASy Swiss-Prot
Match: ARF2_RAT (ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.412e-75
Identity = 138/154 (89.61%), Postives = 147/154 (95.45%), Query Frame = 1 
Query:    4 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVRDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 465
            AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLLVF NKQDLPNAM+AAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   27 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
[Close]
BLAST of FC870924 vs. ExPASy Swiss-Prot
Match: ARF2_MOUSE (ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.412e-75
Identity = 138/154 (89.61%), Postives = 147/154 (95.45%), Query Frame = 1 
Query:    4 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVRDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 465
            AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLLVF NKQDLPNAM+AAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   27 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
[Close]
BLAST of FC870924 vs. ExPASy Swiss-Prot
Match: ARF2_BOVIN (ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.412e-75
Identity = 138/154 (89.61%), Postives = 147/154 (95.45%), Query Frame = 1 
Query:    4 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVRDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 465
            AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLLVF NKQDLPNAM+AAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   27 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
The following BLAST results are available for this feature:
BLAST of FC870924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
ARF1_SOLTU7.998e-7991.77ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]
ARF3_TAKRU1.412e-7589.61ADP-ribosylation factor 3 OS=Takifugu rubripes GN=... [more]
ARF3_RAT1.412e-7589.61ADP-ribosylation factor 3 OS=Rattus norvegicus GN=... [more]
ARF3_PONAB1.412e-7589.61ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ... [more]
ARF3_MOUSE1.412e-7589.61ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ... [more]
ARF3_HUMAN1.412e-7589.61ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
ARF3_BOVIN1.412e-7589.61ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARF2_RAT1.412e-7589.61ADP-ribosylation factor 2 OS=Rattus norvegicus GN=... [more]
ARF2_MOUSE1.412e-7589.61ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 ... [more]
ARF2_BOVIN1.412e-7589.61ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2DD02ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA2DD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870924 ID=FC870924; Name=FC870924; organism=Citrus clementina; type=EST; length=742bp
GGGGCTGCTGGTAAGACCACTATCTTGTACAAGCTCAAGCTTGGAGAGAT
TGTCACCACAATTCCTACCATTGGGTTTAATGTGGAGACCGTTGAATATA
AAAACATCAGTTTCACTGTGCGGGATGTTGGTGGCCAGGACAAGATTCGT
CCCTTGTGGAGGCATTATTTCCAGAACACTCAAGGTCTCATTTTTGTTGT
GGACAGCAATGACAGAGACCGTATTGTAGAAGCAAGGGATGAATTGCATA
GGATGTTGAATGAGGATGAGCTGCGAGATGCAGTGTTGCTTGTATTTGCT
AACAAACAGGATCTTCCAAATGCAATGAGTGCTGCTGAGATTACTGATAA
GCTTGGCCTCCACTCCCTCAGGCAGCGCCACTGGTACATCCAGAGCACCT
GTGCAACCTCTGGTGAGGGTCTTTATGAAGGTCTGGATTGGCTCTCCAAC
AACATCGCTAACAAGGCCTGAAGCTGTTAAGATCTTTTTGCGGACTGGCA
ATTCTGGATGCAGGGGTGAATATTATCTATTTTTTTTTCTTTTTAACCCT
TTTTGTTTGAGACGTTTGGGTTGTTGTGTTGTTTTGGTCCTAGGATCTTT
ACAACTATATTGTAATAGAAGAATTGTTGGTTGGATACATGTACTCCAAG
GTTTTTGGCTCGGTTTAGATATCTGTAATTGAAACTAATTTGGTGCACCA
CTCATATTTGAAATTGTTTTTTTAAAAAAAAAAAAAAAAAAA
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