FC871082

Overview
NameFC871082
Unique NameFC871082
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length868
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC871082 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.049e-11
Identity = 46/144 (31.94%), Postives = 72/144 (50.00%), Query Frame = 2 
Query:  302 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEP-GWESMDSMEEGERQSN 730
            KR+  ++K L++D P  I     ++ + L  AVI G + TP+  G F   + F  DYPN PP V + S     +PN+Y  G +CL +L         +W P +  +  +L SIQ+L+ +  P  N P   E+     E +R+ N
Sbjct:    7 KRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVS--RMFHPNIYADGSICLDIL-------QNQWSP-IYDVAAILTSIQSLLCDPNP--NSPANSEAARMFSENKREYN 138
[Close]
BLAST of FC871082 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 42/127 (33.07%), Postives = 65/127 (51.18%), Query Frame = 2 
Query:  302 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEP 682
            +R+  ++K L+ D P  +     E+ +    AVI G EGTP+ DG F   + F  +YPN PP V + S     +PN+Y  G +CL +L         +W P+   +  +L SIQ+L+  + P  N P
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLS--KMFHPNVYADGSICLDIL-------QNRWSPTYD-VSSILTSIQSLL--DEPNPNSP 121
[Close]
BLAST of FC871082 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 42/127 (33.07%), Postives = 65/127 (51.18%), Query Frame = 2 
Query:  302 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEP 682
            +R+  ++K L+ D P  +     E+ +    AVI G EGTP+ DG F   + F  +YPN PP V + S     +PN+Y  G +CL +L         +W P+   +  +L SIQ+L+  + P  N P
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLS--KMFHPNVYADGSICLDIL-------QNRWSPTYD-VSSILTSIQSLL--DEPNPNSP 121
[Close]
BLAST of FC871082 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 42/127 (33.07%), Postives = 65/127 (51.18%), Query Frame = 2 
Query:  302 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEP 682
            +R+  ++K L+ D P  +     E+ +    AVI G EGTP+ DG F   + F  +YPN PP V + S     +PN+Y  G +CL +L         +W P+   +  +L SIQ+L+  + P  N P
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLS--KMFHPNVYADGSICLDIL-------QNRWSPTYD-VSSILTSIQSLL--DEPNPNSP 121
[Close]
BLAST of FC871082 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 42/127 (33.07%), Postives = 65/127 (51.18%), Query Frame = 2 
Query:  302 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEP 682
            +R+  ++K L+ D P  +     E+ +    AVI G EGTP+ DG F   + F  +YPN PP V + S     +PN+Y  G +CL +L         +W P+   +  +L SIQ+L+  + P  N P
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLS--KMFHPNVYADGSICLDIL-------QNRWSPTYD-VSSILTSIQSLL--DEPNPNSP 121
[Close]
BLAST of FC871082 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 42/127 (33.07%), Postives = 65/127 (51.18%), Query Frame = 2 
Query:  302 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEP 682
            +R+  ++K L+ D P  +     E+ +    AVI G EGTP+ DG F   + F  +YPN PP V + S     +PN+Y  G +CL +L         +W P+   +  +L SIQ+L+  + P  N P
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLS--KMFHPNVYADGSICLDIL-------QNRWSPTYD-VSSILTSIQSLL--DEPNPNSP 121
[Close]
BLAST of FC871082 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 46/144 (31.94%), Postives = 71/144 (49.31%), Query Frame = 2 
Query:  302 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEP-GWESMDSMEEGERQSN 730
            KR+  ++K L+ D P  I     ++ + L  AVI G + TP+  G F   + F  DYPN PP V + S     +PN+Y  G +CL +L         +W P +  +  +L SIQ+L+ +  P  N P   E+     E +R+ N
Sbjct:    7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVS--RMFHPNIYADGSICLDIL-------QNQWSP-IYDVAAILTSIQSLLCDPNP--NSPANSEAARMFSESKREYN 138
The following BLAST results are available for this feature:
BLAST of FC871082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
UBC2_MEDSA7.049e-1131.94Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBE2B_RAT9.206e-1133.07Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT9.206e-1133.07Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE9.206e-1133.07Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN9.206e-1133.07Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN9.206e-1133.07Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC2_ARATH9.206e-1131.94Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAA1BG10ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA1BG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871082 ID=FC871082; Name=FC871082; organism=Citrus clementina; type=EST; length=868bp
GGGGGGACCATTGATGCCTTGGTGGCACGAGTCTTTGAAAGCTGAACTGA
ATCCAACTTTTGCCAACAACACTAATCATCTAAGTTTTTATGATCCATTT
GATAATGAGGATATGCCTCCTGAAGAACCGATCGATACCCCTAGTGGTGA
AGATTGCAGTAGGAATAAGGAAAGCCTAGATGGAGATGATGTTCTGATGA
GATTCAAACTTTTTAAACAGTTTGATGCTGTTGAAGATCATTCAGACCAT
TACTATGCTTCTAATGTTTCATCATTGGAGCAGCCATCAAATAAATTGGT
GAAGCGAATTCAGGAAGAGTGGAAAATCCTGGAAAATGATTTGCCAGATA
CAATTTTTGTGAGGGTTTATGAATCAAGGATGGATCTTTTGAGGGCCGTA
ATTGTAGGGGCAGAGGGAACTCCCTACCATGATGGCCTGTTCTTCTTTGA
TGTTTTCTTCCCTAGTGATTATCCTAATGTACCTCCGAATGTCCACTACC
ACTCCGGTGGCCTTCGACTCAATCCAAATTTATATAATTGTGGGAAGGTA
TGCCTTAGTCTTCTTAACACCTGGGATGGTGATAAGAATGAGAAGTGGAT
CCCTTCTATGTCAACCATGCTACAAGTTTTGGTCTCTATACAAGCACTGA
TCTTGAATGAAAGGCCTTACTTTAACGAACCTGGTTGGGAAAGTATGGAC
AGCATGGAAGAAGGTGAAAGACAGTCCAATATGTACAATGAGCGTGCATT
TATCTTGTCACTGAAGACAATGCTGTACACTGTCAGGAGACCTCCAAAGC
ATTTCAATGATTTTGTTAGTGGCCACTTTTACCAGCGTGCACATGATATT
CTGGCTGCATGTAAAGCA
back to top