FC871089

Overview
NameFC871089
Unique NameFC871089
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871089 vs. ExPASy Swiss-Prot
Match: FUMC_LISIN (Fumarate hydratase class II OS=Listeria innocua GN=fumC PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.131e-23
Identity = 54/111 (48.65%), Postives = 74/111 (66.67%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 335
            +  S G+FELNV+KP+I    L S+ LL D+  SF  +C+ G+ AN   I   +++SLMLVT+LNP IGY+ AA +AK A  E TTLK+AA+K G +  +EFD  + P KM
Sbjct:  342 IAASQGNFELNVYKPVIIFNFLESITLLSDSMRSFRIHCLEGLTANESVIEAKVNDSLMLVTALNPHIGYEKAAKIAKLAFDENTTLKEAAIKTGFVTEKEFDLWIDPLKM 452          
BLAST of FC871089 vs. ExPASy Swiss-Prot
Match: FUMC_CHLPN (Fumarate hydratase class II OS=Chlamydia pneumoniae GN=fumC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.783e-23
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 341
            +GGS G+FELNV KP+I    L S+ LL +   +F +  V+G++ N+ R+   ++ SLMLVT+L P +GYD  +  A KA  E  +LK+A L LG L+ +EFD LVVPE M+G
Sbjct:  346 IGGSRGNFELNVMKPVIIYNFLQSVDLLSEGMRAFSEFFVKGLKVNKARLQDNINNSLMLVTALAPVLGYDKCSKAALKAFHESISLKEACLALGYLSEKEFDRLVVPENMVG 458          
BLAST of FC871089 vs. ExPASy Swiss-Prot
Match: FUMC_CHLCV (Fumarate hydratase class II OS=Chlamydophila caviae GN=fumC PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.381e-22
Identity = 51/113 (45.13%), Postives = 74/113 (65.49%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 341
            +GGS G+FELNV KP+I    L S+ +L     +F    V G++ N+ R+ + L  SLMLVT+L P +GYD  + +A KA  +   LK+A +++G L++EEFD LVVPE M+G
Sbjct:  346 MGGSRGNFELNVMKPVIIYNFLQSVDILAGGMQAFADYFVSGLRVNKPRLKEYLDNSLMLVTALTPVLGYDKCSKMALKAFHDNINLKEACIQMGYLSAEEFDRLVVPESMVG 458          
BLAST of FC871089 vs. ExPASy Swiss-Prot
Match: FUMC_BLOFL (Fumarate hydratase class II OS=Blochmannia floridanus GN=fumC PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.356e-22
Identity = 51/114 (44.74%), Postives = 78/114 (68.42%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 344
            +GGS+G  +LN ++P+I    L S+RLL D+  +F   C+ GI+   +RI KLL++SLMLVT+L+  IGYD +A +A+ A+  G TLK A+++ G +  ++FD+ V PE MI P
Sbjct:  333 LGGSSGQLQLNTYRPLIIYNFLQSIRLLTDSIKNFHDYCIVGIRPKFKRIEKLLNKSLMLVTALSSHIGYDKSAQIAQTAYLNGITLKAASIQSGYVTEKQFDDWVCPENMIYP 446          
BLAST of FC871089 vs. ExPASy Swiss-Prot
Match: FUMC_PROMA (Fumarate hydratase class II OS=Prochlorococcus marinus GN=fumC PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.169e-21
Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 341
            + GS GH ++N +KP+IA  LL S+ LL  A  S     + GI+ N E+I   L  SLML+TSL P IGY+ A+ +A+ AH++  TLK+A   LG LN ++FD +V P+ M G
Sbjct:  350 MAGSGGHLQMNSYKPLIAFNLLESIDLLSSACKSSRILMIEGIEPNLEKIQNSLQNSLMLITSLTPIIGYEKASKIAQCAHEKDITLKEATKLLGYLNEDDFDRIVNPQSMTG 462          
BLAST of FC871089 vs. ExPASy Swiss-Prot
Match: FUMC2_BRAJA (Fumarate hydratase class II 2 OS=Bradyrhizobium japonicum GN=fumC2 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 3.402e-21
Identity = 50/113 (44.25%), Postives = 70/113 (61.95%), Query Frame = 3
Query:    6 GGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 344
            GG+ G+ E+NV+KP+I   +  S+ +L D   +F    V G + NR++I + +  SLMLVT+L P IGYD A+ +A  A     TLK AALKLG +   EFD +V P KM+ P
Sbjct:  350 GGAGGYLEMNVYKPLIIHNIAQSVTILTDGCTNFRTFLVEGTEPNRKKIKEYVERSLMLVTALAPVIGYDKASRIAHYAMDNDLTLKSAALKLGFVTEPEFDRIVDPAKMVKP 462          
BLAST of FC871089 vs. ExPASy Swiss-Prot
Match: FUMC_CHLMU (Fumarate hydratase class II OS=Chlamydia muridarum GN=fumC PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.415e-20
Identity = 50/111 (45.05%), Postives = 70/111 (63.06%), Query Frame = 3
Query:    9 GSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 341
            G+ G+FELNV KP+I    L S+ LL  A  SF    V G++ NR ++ + +  SLMLVT+L P +GYD  + +A KA  E  +LK+A + LG L+ +EFD  VVP  M+G
Sbjct:  348 GTKGNFELNVMKPVIIYDFLQSVNLLSGAMRSFADYFVSGLKVNRGQLQQNVERSLMLVTALAPVLGYDKCSKIALKAFHENLSLKEACVSLGFLSEQEFDTHVVPGLMLG 458          
BLAST of FC871089 vs. ExPASy Swiss-Prot
Match: FUMC_CHLTR (Fumarate hydratase class II OS=Chlamydia trachomatis GN=fumC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.184e-19
Identity = 48/111 (43.24%), Postives = 70/111 (63.06%), Query Frame = 3
Query:    9 GSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 341
            G+ G+FELNV KP+I    L S+ LL  A  SF    V G++ N+ ++ + +  SLMLVT+L P +GYD  + +A KA  E  +LK+A + LG L+ +EFD  V+P  M+G
Sbjct:  348 GTKGNFELNVMKPVIIYDFLQSVNLLAGAMRSFADYFVCGLKVNKGQLQQNVERSLMLVTALAPVLGYDKCSKIALKAFHENLSLKEACVSLGFLSEKEFDEHVIPGLMVG 458          
BLAST of FC871089 vs. ExPASy Swiss-Prot
Match: FUMC_PROMP (Fumarate hydratase class II OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=fumC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.210e-18
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 338
            +  ++G  ++N +KP+I   +L S++LL  A ++F    V GIQ N + I   L  SLMLVT+L PKIGY+ AA +A  A  E   LK+A +KLG L + EF++ +   KMI
Sbjct:  350 IANASGTLQMNEYKPLIGFNILTSIKLLNHAISNFRLKLVEGIQPNPKTIKANLENSLMLVTALVPKIGYEKAAEIANLAFNESINLKEATIKLGYLTANEFEDAINTNKMI 461          
BLAST of FC871089 vs. ExPASy Swiss-Prot
Match: ASPA_HELPY (Aspartate ammonia-lyase OS=Helicobacter pylori GN=aspA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.338e-17
Identity = 44/114 (38.60%), Postives = 67/114 (58.77%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 344
            +    G  +LNVF+P+IA  L HS  +LG A  +    CV GI AN +     +  S+ +VT+LNP IGY+ +A +AK+A K   ++ D AL+  +L  E+ D++  PE M+ P
Sbjct:  347 LAAEGGQLQLNVFEPVIAYKLFHSFVILGRAIETLTTKCVEGITANEKICHDYVFNSIGIVTALNPHIGYEKSAMIAKEALKSDRSIYDIALEKKILTKEQLDDIFKPENMLSP 460          
The following BLAST results are available for this feature:
BLAST of FC871089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_LISIN2.131e-2348.65Fumarate hydratase class II OS=Listeria innocua GN... [more]
FUMC_CHLPN2.783e-2346.90Fumarate hydratase class II OS=Chlamydia pneumonia... [more]
FUMC_CHLCV1.381e-2245.13Fumarate hydratase class II OS=Chlamydophila cavia... [more]
FUMC_BLOFL2.356e-2244.74Fumarate hydratase class II OS=Blochmannia florida... [more]
FUMC_PROMA1.169e-2145.13Fumarate hydratase class II OS=Prochlorococcus mar... [more]
FUMC2_BRAJA3.402e-2144.25Fumarate hydratase class II 2 OS=Bradyrhizobium ja... [more]
FUMC_CHLMU6.415e-2045.05Fumarate hydratase class II OS=Chlamydia muridarum... [more]
FUMC_CHLTR3.184e-1943.24Fumarate hydratase class II OS=Chlamydia trachomat... [more]
FUMC_PROMP1.210e-1841.96Fumarate hydratase class II OS=Prochlorococcus mar... [more]
ASPA_HELPY1.338e-1738.60Aspartate ammonia-lyase OS=Helicobacter pylori GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAA3AD06ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3AD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871089 ID=FC871089; Name=FC871089; organism=Citrus clementina; type=EST; length=501bp
CAGTGGGTGGATCAAATGGCCATTTTGAACTAAATGTATTCAAGCCAATG
ATTGCTAGTGGTCTCCTACATTCACTGAGATTGCTGGGAGATGCATCTGC
TTCTTTTGAGAAGAACTGTGTGAGAGGAATTCAAGCTAATAGGGAAAGGA
TTTCCAAATTGCTGCACGAGTCATTGATGCTTGTCACATCCTTGAATCCT
AAAATTGGTTATGACAATGCTGCGGCAGTTGCCAAGAAGGCTCACAAGGA
GGGAACTACACTTAAGGATGCTGCATTGAAACTCGGAGTACTCAATAGTG
AAGAATTTGATAATCTTGTGGTACCTGAGAAAATGATTGGCCCATCCGAC
TAACCAGCTTATGTGGGTTAAACTCCTGGGATTTGCTTTTGGCTTTTGTA
TCATTTTGCGGGATATCTGTTTCTGCGCCGTTTCTCTCCCCTCAGGCCTC
AACTGAATCACTTGATAGGGATCCAAATAGTGATTTTGCTTTTATTTTAA
A
back to top