FC872062

Overview
NameFC872062
Unique NameFC872062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872062 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.950e-16
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 2
Query:    2 GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 130
            GAAVIYNKDKAWDDQW+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  238 GAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK 280          
BLAST of FC872062 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.950e-16
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 2
Query:    2 GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 130
            GAAVIYNKDKAWDDQW+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  239 GAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK 281          
BLAST of FC872062 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.444e-16
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 139
            GAAVI+NK K WDD W+FWVGPFIGA IAAFYHQF+LRA   K+LG
Sbjct:  232 GAAVIFNKSKPWDDHWIFWVGPFIGATIAAFYHQFVLRASGSKSLG 277          
BLAST of FC872062 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.440e-15
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 2
Query:    2 GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 130
            GAAVIYN DKAWDD W+FWVGPFIGAAIAA YHQ++LRA A K
Sbjct:  234 GAAVIYNNDKAWDDHWIFWVGPFIGAAIAAAYHQYVLRASAAK 276          
BLAST of FC872062 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.440e-15
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 2
Query:    2 GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 130
            G AVIYNKDKAWDDQW+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  238 GTAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASAAK 280          
BLAST of FC872062 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.457e-15
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 139
            GAAVIYN+ KAWDD W+FW GPFIGA  AA YHQ+ILRA A+KALG
Sbjct:  229 GAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQYILRAAAIKALG 274          
BLAST of FC872062 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.209e-15
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 2
Query:    2 GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKAL 136
            GAAVIYN +KAWDD W+FWVGPF+GA  AA YHQ+ILRA A+KAL
Sbjct:  225 GAAVIYNNEKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKAL 269          
BLAST of FC872062 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.209e-15
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 139
            GAAVIYNK + WDD W+FWVGPF+GA  AA YHQ++LRA A+KALG
Sbjct:  229 GAAVIYNKKRVWDDHWIFWVGPFVGALAAAAYHQYVLRAAAIKALG 274          
BLAST of FC872062 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.051e-14
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 2
Query:    2 GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGA 124
            GAAV+YN  KAW DQW+FWVGPFIGAAIAA YHQ +LRA A
Sbjct:  238 GAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRASA 278          
BLAST of FC872062 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.051e-14
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 2
Query:    2 GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGA 124
            GAAV+YN  KAW DQW+FWVGPFIGAAIAA YHQ +LRA A
Sbjct:  233 GAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRASA 273          
The following BLAST results are available for this feature:
BLAST of FC872062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PIP24_MAIZE4.950e-1683.72Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_MAIZE4.950e-1683.72Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP23_ARATH8.444e-1676.09Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP25_MAIZE1.440e-1581.40Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP22_ORYSJ1.440e-1581.40Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP26_ORYSJ2.457e-1576.09Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP28_ARATH3.209e-1575.56Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP1_ATRCA3.209e-1571.74Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP26_MAIZE6.051e-1478.05Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP25_ORYSJ6.051e-1478.05Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CB01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872062 ID=FC872062; Name=FC872062; organism=Citrus clementina; type=EST; length=531bp
GGGGGCCGCTGTTATTTACAACAAGGACAAGGCTTGGGATGATCAATGGC
TCTTCTGGGTTGGACCCTTCATTGGTGCAGCAATTGCAGCTTTCTACCAC
CAATTCATCTTGAGAGCTGGAGCTGTCAAGGCTCTTGGTTCATTCAGGAG
CCAATCCCGTGTCTGATTTTAGTTTCTTCGACAAGTGGATTATCCACATC
TTCATGGGGTTAATGATTTAAAATTGGAAAGAAAAAACTGGGAAGGAGTA
GAGGTGTGTTAAGTTTCAAAAAGTGAATAATGAGGGGGGTGTGATTTGTG
CTTTCAAGGAGTTGTAGGCAGAAAGTCTCTTAGACAATGAGGGGCTTTTT
TGTAAATCCCCTGTGTTGTTTTCAAGCACTTTCCTTAGAATTCACTTCTT
CAATGTTTCTGTCTCTTTCTACTTTGTATTATTTTCTCCGTATGTGATTA
TTATTATTATTATTATTATGCTTTAAGGAAAAAAAAACAAAATTATTAGC
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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