FC872123

Overview
NameFC872123
Unique NameFC872123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: FRMA_ECOK1 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=frmA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.384e-15
Identity = 69/224 (30.80%), Postives = 96/224 (42.86%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC---SQAQCSGYSVDG------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEK 763
            K GEVL++V ++GVCHTD     GD P +   P+V GHEGAG +V +G+G +T++K G +V I      C +CE CR G    C    + Q  G   DG                  TF +Y V     +  I      E    + C   T   A+ N +K +PG                     A   R+IAIDT   K +L   +GA   ++  D+  P K
Sbjct:   26 KKGEVLIKVTHTGVCHTDAFTLSGDDP-EGVFPVVLGHEGAGVVVEVGEG-VTSVKPGDHV-IPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCINPNDYDKPIK 246          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADHX_ARATH (Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.807e-15
Identity = 62/228 (27.19%), Postives = 99/228 (43.42%), Query Frame = 2
Query:  143 QQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQC------------SGYSVDG----------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 757
            Q A  + GEV +++ Y+ +CHTD + W G  P +   P + GHE AG + ++G+G +T ++ G +V I      C +C+ C+ G    C + +             S +SV+G          TF QY V +   V  I    PL++   + C   T   A+ N +K  PG                     A   R+I ID    K +    +G ++FV+ +DH  P
Sbjct:   28 QVAPPQAGEVRIKILYTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEG-VTEVQAGDHV-IPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKP 252          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: FRMA_SHISS (S-(hydroxymethyl)glutathione dehydrogenase OS=Shigella sonnei (strain Ss046) GN=frmA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.360e-15
Identity = 69/224 (30.80%), Postives = 95/224 (42.41%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC---SQAQCSGYSVDG------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEK 763
            K GEVL++V ++GVCHTD     GD P +   P+V GHEGAG +V +G+G +T++K G +V I      C +CE CR G    C    + Q  G   DG                  TF +Y V     +  I      E    + C   T   A+ N +K +PG                     A   R+IAIDT   K  L   +GA   ++  D+  P K
Sbjct:   26 KKGEVLIKVTHTGVCHTDAFTLSGDDP-EGVFPVVLGHEGAGVVVEVGEG-VTSVKPGDHV-IPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIK 246          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLI (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain K12) GN=frmA PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.360e-15
Identity = 69/224 (30.80%), Postives = 95/224 (42.41%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC---SQAQCSGYSVDG------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEK 763
            K GEVL++V ++GVCHTD     GD P +   P+V GHEGAG +V +G+G +T++K G +V I      C +CE CR G    C    + Q  G   DG                  TF +Y V     +  I      E    + C   T   A+ N +K +PG                     A   R+IAIDT   K  L   +GA   ++  D+  P K
Sbjct:   26 KKGEVLIKVTHTGVCHTDAFTLSGDDP-EGVFPVVLGHEGAGVVVEVGEG-VTSVKPGDHV-IPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIK 246          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLC (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=frmA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.360e-15
Identity = 69/224 (30.80%), Postives = 95/224 (42.41%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC---SQAQCSGYSVDG------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEK 763
            K GEVL++V ++GVCHTD     GD P +   P+V GHEGAG +V +G+G +T++K G +V I      C +CE CR G    C    + Q  G   DG                  TF +Y V     +  I      E    + C   T   A+ N +K +PG                     A   R+IAIDT   K  L   +GA   ++  D+  P K
Sbjct:   26 KKGEVLIKVTHTGVCHTDAFTLSGDDP-EGVFPVVLGHEGAGVVVEVGEG-VTSVKPGDHV-IPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIK 246          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: FRMA_ECOHS (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=frmA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.360e-15
Identity = 69/224 (30.80%), Postives = 95/224 (42.41%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC---SQAQCSGYSVDG------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEK 763
            K GEVL++V ++GVCHTD     GD P +   P+V GHEGAG +V +G+G +T++K G +V I      C +CE CR G    C    + Q  G   DG                  TF +Y V     +  I      E    + C   T   A+ N +K +PG                     A   R+IAIDT   K  L   +GA   ++  D+  P K
Sbjct:   26 KKGEVLIKVTHTGVCHTDAFTLSGDDP-EGVFPVVLGHEGAGVVVEVGEG-VTSVKPGDHV-IPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIK 246          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: FRMA_ECO57 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O157:H7 GN=frmA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.360e-15
Identity = 69/224 (30.80%), Postives = 95/224 (42.41%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC---SQAQCSGYSVDG------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEK 763
            K GEVL++V ++GVCHTD     GD P +   P+V GHEGAG +V +G+G +T++K G +V I      C +CE CR G    C    + Q  G   DG                  TF +Y V     +  I      E    + C   T   A+ N +K +PG                     A   R+IAIDT   K  L   +GA   ++  D+  P K
Sbjct:   26 KKGEVLIKVTHTGVCHTDAFTLSGDDP-EGVFPVVLGHEGAGVVVEVGEG-VTSVKPGDHV-IPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIK 246          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: FRMA_ECO24 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.360e-15
Identity = 69/224 (30.80%), Postives = 95/224 (42.41%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC---SQAQCSGYSVDG------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEK 763
            K GEVL++V ++GVCHTD     GD P +   P+V GHEGAG +V +G+G +T++K G +V I      C +CE CR G    C    + Q  G   DG                  TF +Y V     +  I      E    + C   T   A+ N +K +PG                     A   R+IAIDT   K  L   +GA   ++  D+  P K
Sbjct:   26 KKGEVLIKVTHTGVCHTDAFTLSGDDP-EGVFPVVLGHEGAGVVVEVGEG-VTSVKPGDHV-IPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIK 246          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: YL498_MIMIV (Probable zinc-type alcohol dehydrogenase-like protein L498 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L498 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.257e-15
Identity = 56/193 (29.02%), Postives = 80/193 (41.45%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQC---------------SGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRK 700
            EV + + Y+G+CH+D H   G+W A    PL+ GHE  G ++ IG   +    +G  V +  + DSC  C+ C   IE  C                    SG    G +    +     V   P  L +E+ AP++CAG T Y  L  +K  PG                 + A AMG  V+AI   + K K
Sbjct:   97 EVSIEIYYTGICHSDWHFIVGEWKAD--FPLIPGHELIGRVIDIGPN-VDKYSIGDIVCVSPVIDSCGHCKMCTHHIEQHCMNGATEIYNQKTRLPGDIKPSGPITYGGYSNIVIIKQHFVYKFPKNLDIERCAPLMCAGATTYSPLRQAKVGPGM-KVGIVGIGGLGHIAVKIAKAMGAHVVAITRTEWKFK 285          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADHL_GADMO (Alcohol dehydrogenase class-3 chain L OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.968e-15
Identity = 63/220 (28.64%), Postives = 95/220 (43.18%), Query Frame = 2
Query:  164 GEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC----------------SQAQCSG-----YSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNS-KARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 757
            GEV +++  +G+CHTD +   G  P +   P V GHEGAG + ++G+G +T  K G  V I      C +C+ C+      C                S+  C+G     +    TF +Y V     +  + +  PL++   + CA  T Y A LN+ K   G                    AA   R+IAID   DK ++   +GA   V+ +DHS P
Sbjct:   34 GEVRIKIVATGICHTDAYTLSGSDP-EGVFPSVLGHEGAGIVESVGEG-VTKFKSGDAV-IPLYVPQCGECKFCKNPKTNLCQKIRLTQGKGLMPNGTSRFSCNGQVLFHFMGSSTFSEYTVVAEISLAKVHEKAPLDKVCLLGCAISTGYGAALNTAKVEAGSTCAVFGLGALGLAVIMGCQAAGASRIIAIDVNPDKFRIAKEFGATDLVNPKDHSKP 250          
The following BLAST results are available for this feature:
BLAST of FC872123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
FRMA_ECOK11.384e-1530.80S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADHX_ARATH1.807e-1527.19Alcohol dehydrogenase class-3 OS=Arabidopsis thali... [more]
FRMA_SHISS2.360e-1530.80S-(hydroxymethyl)glutathione dehydrogenase OS=Shig... [more]
FRMA_ECOLI2.360e-1530.80S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOLC2.360e-1530.80S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOHS2.360e-1530.80S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO572.360e-1530.80S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO242.360e-1530.80S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
YL498_MIMIV5.257e-1529.02Probable zinc-type alcohol dehydrogenase-like prot... [more]
ADHL_GADMO8.968e-1528.64Alcohol dehydrogenase class-3 chain L OS=Gadus mor... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2CH02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872123 ID=FC872123; Name=FC872123; organism=Citrus clementina; type=EST; length=788bp
GGGGACTCTCTCTTTCTCTCTTCACAACTCTACAGCAATCAAAACTATGT
CACAAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGAC
CACAATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGGC
TGACCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTAT
GCCACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCGT
CTACCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCGG
AGACGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAAT
GGCTCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGAG
GCTACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTTT
CCAACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGACG
GATTACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGTC
TATCGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCAT
TGTGGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCCG
CCATGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAAA
CTTTGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCGAGGATCACTC
GGATCCCGAGAAGTTTATCAAAGCGATCAAGGATATGT
back to top