FC872123

Overview
NameFC872123
Unique NameFC872123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADH6_PERMA (Alcohol dehydrogenase 6 OS=Peromyscus maniculatus GN=ADH6 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.915e-14
Identity = 63/221 (28.51%), Postives = 91/221 (41.18%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSG--------------------YSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNS-KARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 757
            K  EV V++  +G+C TD+ +      A P  P++ GHEG G + ++G+G  T +K G  V I  L   C +C  C       C + + SG                    Y   GTF +Y V     V  + +   LE+A  I C   T + A +NS K  PG                    AA   R+IA+DT  DK     + GA + +D +D   P
Sbjct:   33 KGKEVRVKMVAAGICGTDIKSLDNKKLA-PFCPIIMGHEGTGIVESVGEGVST-VKTGDKVIILCLPQ-CGECNTCLNSKNNICKEVRLSGTHLTSEGNSRITCKGKTTYQYITTGTFSEYIVIKEISVAKVDEDALLEKACIIGCGFATGFGAAINSAKVSPGSTCAVFGLGGVGLSVIMGCKAAGAARIIAVDTNKDKFAKAKTVGATECIDPQDFEKP 250          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADHX_RABIT (Alcohol dehydrogenase class-3 OS=Oryctolagus cuniculus GN=ADH5 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.295e-13
Identity = 64/222 (28.83%), Postives = 92/222 (41.44%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC----------------SQAQCSG-----YSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 757
            K  EV +++  + VCHTD +   G  P +   P++ GHEGAG + ++G+G +TNLK G  V I      C +C+ C       C                S+  C G     Y    TF +Y V     V  I    PL++   + C   T Y A LN +K  PG                    AA   R+IA+D   DK      +GA + ++ +D S P
Sbjct:   31 KAHEVRIKIFATAVCHTDAYTLSGADP-EGCFPVILGHEGAGIVESVGEG-VTNLKAGDTV-IPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGAALNTAKVEPGSTCAVFGLGGVGLAAIMGCKAAGASRIIAVDINKDKFARAKEFGATECINPQDFSKP 249          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSJ (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.295e-13
Identity = 60/228 (26.32%), Postives = 99/228 (43.42%), Query Frame = 2
Query:  143 QQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQC------------SGYSVDG----------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 757
            Q A  + GEV V++ ++ +CHTD + W G  P +   P + GHE AG + ++G+G +T ++ G +V I      C +C+ C+ G    C + +             S +S++G          TF QY V +   V  I    PL++   + C   T   A+ N +K   G                    +A   R+I ID    K  +  ++G  +FV+ +DH  P
Sbjct:   30 QVAPPQAGEVRVKILFTALCHTDHYTWSGKDP-EGLFPCILGHEAAGIVESVGEG-VTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRAATGVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVSTGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVAKNFGVTEFVNPKDHDKP 254          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSI (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.295e-13
Identity = 60/228 (26.32%), Postives = 99/228 (43.42%), Query Frame = 2
Query:  143 QQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQC------------SGYSVDG----------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 757
            Q A  + GEV V++ ++ +CHTD + W G  P +   P + GHE AG + ++G+G +T ++ G +V I      C +C+ C+ G    C + +             S +S++G          TF QY V +   V  I    PL++   + C   T   A+ N +K   G                    +A   R+I ID    K  +  ++G  +FV+ +DH  P
Sbjct:   30 QVAPPQAGEVRVKILFTALCHTDHYTWSGKDP-EGLFPCILGHEAAGIVESVGEG-VTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRAATGVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVSTGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVAKNFGVTEFVNPKDHDKP 254          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADHX_SPAAU (Alcohol dehydrogenase class-3 OS=Sparus aurata PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.691e-13
Identity = 60/219 (27.40%), Postives = 92/219 (42.01%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC----------------SQAQCSGYSV-----DGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNS-KARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 757
            EV +++  +GVCHTD +   G  P +   P++ GHEGAG + ++G+G +T  K G  V I      C +C+ C+      C                S+  C G  V       TF +Y V     +  + +  P+++   + C   T Y A LN+ K  PG                     A   R+I ID    K +    +GA +FV+ +DHS P
Sbjct:   36 EVRIKLFATGVCHTDAYTLSGSDP-EGLFPVILGHEGAGTVESVGEG-VTKFKPGDTV-IPLYVPQCGECKFCKNPKTNLCQKIRITQGQGLLPDKTSRFTCKGKQVFHFMGTSTFSEYTVVADISLAKVNEKAPMDKVCLLGCGISTGYGAALNTAKVEPGSTCAVFGLGAVGLAVIMGCKVAGATRIIGIDLNPAKFETAKEFGATEFVNPKDHSKP 251          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADH1_GADCA (Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.209e-13
Identity = 63/220 (28.64%), Postives = 93/220 (42.27%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDL-HAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC----------------SQAQCSGYSV-----DGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNS-KARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 757
            E+ +++  +GVCHTDL H ++G    K   P+V GHEGAG + ++G G +T  + G+ V I      C +C  C+      C                ++  C G  V       TF QY V     V  I    PL+    + C   T + A +N+ K  PG                    +A   R+IA+D   DK +    +GA  FV+  DHS+P
Sbjct:   35 EIRIKIIATGVCHTDLYHLFEGKH--KDGFPVVLGHEGAGIVESVGPG-VTEFQPGEKV-IPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEP 250          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_XANOR (L-threonine 3-dehydrogenase OS=Xanthomonas oryzae pv. oryzae GN=tdh PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.885e-13
Identity = 52/149 (34.90%), Postives = 76/149 (51.01%), Query Frame = 2
Query:   83 ACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKPRLP-LVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA 523
            A V ++ N  I +++  PVP      P EVL++++ + +C TDLH +  D W  +   P L  GHE  G +  +G   +T  +VGQ V  +     C  C NCR G    C      G +V+G F +Y V  A ++ PIPD +P E AA
Sbjct:    3 ALVKRETNKGI-WLEQVPVPTPG---PNEVLIKLEKTAICGTDLHIYLWDEWSQRTIKPGLTIGHEFVGRVAELGSA-VTGYQVGQRVSAEGHI-VCGHCRNCRGGRPHLCPNTMGIGVNVNGAFAEYMVMPASNLWPIPDQIPSELAA 145          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_XANOM (L-threonine 3-dehydrogenase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=tdh PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.885e-13
Identity = 52/149 (34.90%), Postives = 76/149 (51.01%), Query Frame = 2
Query:   83 ACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKPRLP-LVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA 523
            A V ++ N  I +++  PVP      P EVL++++ + +C TDLH +  D W  +   P L  GHE  G +  +G   +T  +VGQ V  +     C  C NCR G    C      G +V+G F +Y V  A ++ PIPD +P E AA
Sbjct:    3 ALVKRETNKGI-WLEQVPVPTPG---PNEVLIKLEKTAICGTDLHIYLWDEWSQRTIKPGLTIGHEFVGRVAELGSA-VTGYQVGQRVSAEGHI-VCGHCRNCRGGRPHLCPNTMGIGVNVNGAFAEYMVMPASNLWPIPDQIPSELAA 145          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADHX_DROME (Alcohol dehydrogenase class-3 OS=Drosophila melanogaster GN=Fdh PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.885e-13
Identity = 63/221 (28.51%), Postives = 93/221 (42.08%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC----------------SQAQCSGYSV-----DGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSD 754
            K  EV +++  +GVCHTD     G  P +   P+V GHEGAG + ++G+G +TN K G +V I      C +C+ C+ G    C                S+  C G  +       TF +Y V     +T I +  PLE+   + C   T Y A LN +K   G                     A   ++  ID   DK +L   +G   FV+ +D +D
Sbjct:   34 KAHEVRIKITATGVCHTDAFTLSGADP-EGLFPVVLGHEGAGIVESVGEG-VTNFKAGDHV-IALYIPQCNECKFCKSGKTNLCQKIRLTQGAGVMPEGTSRLSCKGQQLFHFMGTSTFAEYTVVADISLTKINEKAPLEKVCLLGCGISTGYGAALNTAKVEAGSTCAVWGLGAVGLAVGLGCKKAGAGKIYGIDINPDKFELAKKFGFTDFVNPKDVAD 251          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_AGRRK (L-threonine 3-dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=tdh PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.768e-13
Identity = 53/145 (36.55%), Postives = 71/145 (48.97%), Query Frame = 2
Query:  134 PVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 562
            PVP+   + P +VL+RV  S +C TD+H W  D W  K   +P+V GHE  G I  IG   +T   VG+ V  +     C  C NCR G    C      G +  G+F ++      +V PIPD +P E AA     G  V+ AL
Sbjct:   23 PVPE---VGPNDVLIRVRKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFCGEIAEIGSA-VTKYHVGERVSGEGHI-VCGKCRNCRAGRGHLCRNTLGVGVNRPGSFGEFVCIPESNVVPIPDDIPDEVAAIFDPFGNAVHTAL 162          
The following BLAST results are available for this feature:
BLAST of FC872123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
ADH6_PERMA9.915e-1428.51Alcohol dehydrogenase 6 OS=Peromyscus maniculatus ... [more]
ADHX_RABIT1.295e-1328.83Alcohol dehydrogenase class-3 OS=Oryctolagus cunic... [more]
ADHX_ORYSJ1.295e-1326.32Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_ORYSI1.295e-1326.32Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_SPAAU1.691e-1327.40Alcohol dehydrogenase class-3 OS=Sparus aurata PE=... [more]
ADH1_GADCA2.209e-1328.64Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV... [more]
TDH_XANOR2.885e-1334.90L-threonine 3-dehydrogenase OS=Xanthomonas oryzae ... [more]
TDH_XANOM2.885e-1334.90L-threonine 3-dehydrogenase OS=Xanthomonas oryzae ... [more]
ADHX_DROME2.885e-1328.51Alcohol dehydrogenase class-3 OS=Drosophila melano... [more]
TDH_AGRRK3.768e-1336.55L-threonine 3-dehydrogenase OS=Agrobacterium radio... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CH02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872123 ID=FC872123; Name=FC872123; organism=Citrus clementina; type=EST; length=788bp
GGGGACTCTCTCTTTCTCTCTTCACAACTCTACAGCAATCAAAACTATGT
CACAAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGAC
CACAATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGGC
TGACCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTAT
GCCACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCGT
CTACCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCGG
AGACGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAAT
GGCTCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGAG
GCTACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTTT
CCAACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGACG
GATTACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGTC
TATCGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCAT
TGTGGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCCG
CCATGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAAA
CTTTGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCGAGGATCACTC
GGATCCCGAGAAGTTTATCAAAGCGATCAAGGATATGT
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