FC872123

Overview
NameFC872123
Unique NameFC872123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: DOIAD_STRFR (2-deoxy-scyllo-inosamine dehydrogenase OS=Streptomyces fradiae GN=neoA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.768e-13
Identity = 51/149 (34.23%), Postives = 72/149 (48.32%), Query Frame = 2
Query:   83 ACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPI 529
            A VF+     +   +D P P      PGE LVRV Y+ VC +DL  +KG W      P+V GHE +G +V +      +L VG+NV +  L  SC  C +C  G    C      G++ DG   +Y      ++ P+PD LPL  A  +
Sbjct:    3 ALVFEAPERAVLTHRDIPAPA-----PGEALVRVAYNSVCGSDLSFYKGVWHGFT-YPVVPGHEWSGSVVDVNGPRGADL-VGRNV-VGDLTCSCGTCAHCAAGTPTLCEDLGELGFTRDGACAEYMTVPVANLRPLPDTLPLRTACQV 143          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_RHIE6 (L-threonine 3-dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=tdh PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.921e-13
Identity = 53/150 (35.33%), Postives = 75/150 (50.00%), Query Frame = 2
Query:  119 FVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 562
            +++D PVP+   + P +VL+RV  S +C TD+H W  D W  K   +P+V GHE +G I  IG   +T   VG+ V  +     C  C NCR G    C      G +  G+F ++      +V PIPD +  E AA     G  V+ AL
Sbjct:   18 WMEDVPVPE---VGPNDVLIRVKKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFSGEIAEIG-SAVTRYHVGERVSGEGHI-VCGKCRNCRAGRGHLCRNTLGVGVNRPGSFGEFVCIPESNVVPIPDDISDEIAAIFDPFGNAVHTAL 162          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: FRMA_HAEIN (S-(hydroxymethyl)glutathione dehydrogenase OS=Haemophilus influenzae GN=frmA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.921e-13
Identity = 67/224 (29.91%), Postives = 93/224 (41.52%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC---SQAQCSGYSVD------------------GTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEK 763
            + GEVL+R  ++GVCHTD     G  P +   P+V GHEGAG +VA+G+G L ++K G +V I      C +CE CR G    C      Q  G   D                   TF +Y+V     +  I      EQ   + C   T   A+ N +K + G                     A   R+IAIDT   K +L   +GA   ++  D+  P K
Sbjct:   35 RKGEVLIRNTHTGVCHTDAFTLSGSDP-EGVFPVVLGHEGAGVVVAVGEGVL-SVKPGDHV-IPLYTAECGECEFCRSGKTNLCVSVRDTQGKGLMPDCTTRFSYQGQPIYHYMGCSTFSEYSVVAEVSLAKINPEANHEQVCLLGCGVTTGIGAVHNTAKVQEGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPAKFELAKQFGATDCLNPNDYDKPIK 255          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADH_SULSR (NAD-dependent alcohol dehydrogenase OS=Sulfolobus sp. (strain RC3) GN=adh PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.921e-13
Identity = 57/214 (26.64%), Postives = 98/214 (45.79%), Query Frame = 2
Query:  122 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDW-------PAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIK-WLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAM-GLRVIAIDTGDDKRKLCASYGADKFVD 736
            +KD  +P+    K  +VL++V+ +GVCH+D+H  +G +           +LP+  GHE AG I  +GD  +   K G  V +  W  +   +C  CR G E  C   +  G + DG + +Y ++           L   +A+P+ C+G+T YRA+  +   P +                Q A A+ G  +I +D  ++  +     GAD  ++
Sbjct:   15 LKDIDIPKP---KGAQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEMGDEVVGYSK-GDLVAVNPWQGEG--NCYYCRIGEEHLCDSPRWLGINFDGAYAEYVLNPHYKYMYKLRRLNAVEASPLTCSGITTYRAVRKASLDPTKTLVVVGAGGGLGTMAVQIAKAVGGATIIGVDVREEAVETAKRAGADYVIN 222          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADH_SULSO (NAD-dependent alcohol dehydrogenase OS=Sulfolobus solfataricus GN=adh PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.921e-13
Identity = 61/219 (27.85%), Postives = 102/219 (46.58%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDW-------PAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIK-WLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYA-VSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAM-GLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEKFIKAIKD 784
            K  +VL++V+ +GVCH+D+H  +G +           +LP+  GHE AG I  +GD  +   K G  V +  W  +   +C  CR G E  C   +  G + DG + +Y  V + +++  +   L   +AAP+ C+G+T YRA+  +   P +                Q A A+ G  +I +D  ++  +     GAD +V      DP   I+ I +
Sbjct:   24 KGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSK-GDLVAVNPWQGEG--NCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKL-RRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD-YVINASMQDPLAEIRRITE 237          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADHH_GADMO (Alcohol dehydrogenase class-3 chain H OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.921e-13
Identity = 59/222 (26.58%), Postives = 93/222 (41.89%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCR---------------EGI------EATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 757
            + GEV ++V  +GVCHTD +   G  P +   P++ GHEGAG + ++G+G +T  K G  V I      C +C+ C+                G+        TC   Q   +    TF +Y V     +  +    PL++   + C   T Y A LN +K  PG                     A   R+I +D   +K    A +GA + ++ +DH+ P
Sbjct:   32 RAGEVRIKVVATGVCHTDAYTLSGSDP-EGAFPVILGHEGAGLVESVGEG-VTKFKAGDTV-IPLYVPQCGECKFCKNPKTNLCQKIRVTQGRGLMPDNTSRFTCKGKQLFHFMGTSTFSEYTVVADISLANVDPKAPLDKVCLLGCGISTGYGAALNTAKVEPGSTCAVFGLGAVGLAAIMGCKVAGATRIIGVDINPEKFGKAAEFGATECLNPKDHARP 250          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_PYRAB (Probable L-threonine 3-dehydrogenase OS=Pyrococcus abyssi GN=tdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.427e-13
Identity = 65/216 (30.09%), Postives = 99/216 (45.83%), Query Frame = 2
Query:  161 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRL--PLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA---PILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMG-LRVIAIDTGDDKRKLCASYGADKFVD-FEDHSDPEKFIKAIKDM 787
            PGEVL++V  + +C TDLH ++ +  A+ R+  P + GHE AG +V +G G +  ++VG  V ++     C  C  CR G    C   +  G   DG F +YAV  A++V   P  +P E A    P+  A  TV    ++ K+                      A A G   VI  +  D +R+L    GAD  ++ FE     E  +K + D+
Sbjct:   29 PGEVLIKVIATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPG-VEGIEVGDYVSVETHI-VCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNVWKNPKSIPPEYATLQEPLGNAVDTVLAGPISGKS------VLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFE-----EDVVKEVMDI 231          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_FRATW (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.427e-13
Identity = 50/150 (33.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  122 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNV-GIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 562
            + D P+P+       +VL+++  + +C TDLH +  D W      +P++ GHE AG +VA GDG +T++ +G  V G   L   C  C NCR G    C +    G +V G F +Y V  A +V  IPD +  + A+     G  ++ AL
Sbjct:   16 INDAPIPEYGY---NDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDG-VTSVDIGDRVSGEGHLV--CGQCRNCRAGKRHLCRKTIGIGVNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTAL 159          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_FRATT (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. tularensis GN=tdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.427e-13
Identity = 50/150 (33.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  122 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNV-GIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 562
            + D P+P+       +VL+++  + +C TDLH +  D W      +P++ GHE AG +VA GDG +T++ +G  V G   L   C  C NCR G    C +    G +V G F +Y V  A +V  IPD +  + A+     G  ++ AL
Sbjct:   16 INDAPIPEYGY---NDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDG-VTSVDIGDRVSGEGHLV--CGQCRNCRAGKRHLCRKTIGIGVNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTAL 159          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_FRATO (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.427e-13
Identity = 50/150 (33.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  122 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNV-GIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 562
            + D P+P+       +VL+++  + +C TDLH +  D W      +P++ GHE AG +VA GDG +T++ +G  V G   L   C  C NCR G    C +    G +V G F +Y V  A +V  IPD +  + A+     G  ++ AL
Sbjct:   16 INDAPIPEYGY---NDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDG-VTSVDIGDRVSGEGHLV--CGQCRNCRAGKRHLCRKTIGIGVNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTAL 159          
The following BLAST results are available for this feature:
BLAST of FC872123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
DOIAD_STRFR3.768e-1334.232-deoxy-scyllo-inosamine dehydrogenase OS=Streptom... [more]
TDH_RHIE64.921e-1335.33L-threonine 3-dehydrogenase OS=Rhizobium etli (str... [more]
FRMA_HAEIN4.921e-1329.91S-(hydroxymethyl)glutathione dehydrogenase OS=Haem... [more]
ADH_SULSR4.921e-1326.64NAD-dependent alcohol dehydrogenase OS=Sulfolobus ... [more]
ADH_SULSO4.921e-1327.85NAD-dependent alcohol dehydrogenase OS=Sulfolobus ... [more]
ADHH_GADMO4.921e-1326.58Alcohol dehydrogenase class-3 chain H OS=Gadus mor... [more]
TDH_PYRAB6.427e-1330.09Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
TDH_FRATW6.427e-1333.33L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATT6.427e-1333.33L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATO6.427e-1333.33L-threonine 3-dehydrogenase OS=Francisella tularen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2CH02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872123 ID=FC872123; Name=FC872123; organism=Citrus clementina; type=EST; length=788bp
GGGGACTCTCTCTTTCTCTCTTCACAACTCTACAGCAATCAAAACTATGT
CACAAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGAC
CACAATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGGC
TGACCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTAT
GCCACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCGT
CTACCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCGG
AGACGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAAT
GGCTCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGAG
GCTACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTTT
CCAACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGACG
GATTACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGTC
TATCGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCAT
TGTGGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCCG
CCATGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAAA
CTTTGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCGAGGATCACTC
GGATCCCGAGAAGTTTATCAAAGCGATCAAGGATATGT
back to top