FC872123

Overview
NameFC872123
Unique NameFC872123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_FRATM (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.427e-13
Identity = 50/150 (33.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  122 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNV-GIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 562
            + D P+P+       +VL+++  + +C TDLH +  D W      +P++ GHE AG +VA GDG +T++ +G  V G   L   C  C NCR G    C +    G +V G F +Y V  A +V  IPD +  + A+     G  ++ AL
Sbjct:   16 INDAPIPEYGY---NDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDG-VTSVDIGDRVSGEGHLV--CGQCRNCRAGKRHLCRKTIGIGVNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTAL 159          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_FRATH (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.427e-13
Identity = 50/150 (33.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  122 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNV-GIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 562
            + D P+P+       +VL+++  + +C TDLH +  D W      +P++ GHE AG +VA GDG +T++ +G  V G   L   C  C NCR G    C +    G +V G F +Y V  A +V  IPD +  + A+     G  ++ AL
Sbjct:   16 INDAPIPEYGY---NDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDG-VTSVDIGDRVSGEGHLV--CGQCRNCRAGKRHLCRKTIGIGVNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTAL 159          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_FRATF (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.427e-13
Identity = 50/150 (33.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  122 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNV-GIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 562
            + D P+P+       +VL+++  + +C TDLH +  D W      +P++ GHE AG +VA GDG +T++ +G  V G   L   C  C NCR G    C +    G +V G F +Y V  A +V  IPD +  + A+     G  ++ AL
Sbjct:   16 INDAPIPEYGY---NDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDG-VTSVDIGDRVSGEGHLV--CGQCRNCRAGKRHLCRKTIGIGVNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTAL 159          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_FRAT1 (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.427e-13
Identity = 50/150 (33.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  122 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNV-GIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 562
            + D P+P+       +VL+++  + +C TDLH +  D W      +P++ GHE AG +VA GDG +T++ +G  V G   L   C  C NCR G    C +    G +V G F +Y V  A +V  IPD +  + A+     G  ++ AL
Sbjct:   16 INDAPIPEYGY---NDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDG-VTSVDIGDRVSGEGHLV--CGQCRNCRAGKRHLCRKTIGIGVNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTAL 159          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_XANCP (L-threonine 3-dehydrogenase OS=Xanthomonas campestris pv. campestris GN=tdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13
Identity = 48/132 (36.36%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  134 PVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKPRLP-LVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA 523
            PVP      P EVL++++ + +C TDLH +  D W  +   P L  GHE  G +  +G   +T  +VGQ V  +     C  C NCR G    C      G +V+G F +Y V  A ++ PIPD +P E AA
Sbjct:   19 PVPTPG---PNEVLIKLEKTAICGTDLHIYLWDEWSQRTITPGLTIGHEFVGRVAELGSA-VTGYQVGQRVSAEGHI-VCGHCRNCRGGRPHLCPNTVGIGVNVNGAFAEYMVMPASNLWPIPDQIPSELAA 145          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_XANCB (L-threonine 3-dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13
Identity = 48/132 (36.36%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  134 PVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKPRLP-LVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA 523
            PVP      P EVL++++ + +C TDLH +  D W  +   P L  GHE  G +  +G   +T  +VGQ V  +     C  C NCR G    C      G +V+G F +Y V  A ++ PIPD +P E AA
Sbjct:   19 PVPTPG---PNEVLIKLEKTAICGTDLHIYLWDEWSQRTITPGLTIGHEFVGRVAELGSA-VTGYQVGQRVSAEGHI-VCGHCRNCRGGRPHLCPNTVGIGVNVNGAFAEYMVMPASNLWPIPDQIPSELAA 145          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_XANC8 (L-threonine 3-dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13
Identity = 48/132 (36.36%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  134 PVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKPRLP-LVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA 523
            PVP      P EVL++++ + +C TDLH +  D W  +   P L  GHE  G +  +G   +T  +VGQ V  +     C  C NCR G    C      G +V+G F +Y V  A ++ PIPD +P E AA
Sbjct:   19 PVPTPG---PNEVLIKLEKTAICGTDLHIYLWDEWSQRTITPGLTIGHEFVGRVAELGSA-VTGYQVGQRVSAEGHI-VCGHCRNCRGGRPHLCPNTVGIGVNVNGAFAEYMVMPASNLWPIPDQIPSELAA 145          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_XANAC (L-threonine 3-dehydrogenase OS=Xanthomonas axonopodis pv. citri GN=tdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13
Identity = 51/149 (34.23%), Postives = 76/149 (51.01%), Query Frame = 2
Query:   83 ACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKPRLP-LVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA 523
            A V ++ N  I +++  PVP      P EVL++++ + +C TDLH +  D W  +   P L  GHE  G +  +G   +T  ++GQ V  +     C  C NCR G    C      G +V+G F +Y V  A ++ PIPD +P E AA
Sbjct:    3 ALVKREANKGI-WLEQVPVPTPG---PNEVLIKLEKTAICGTDLHIYLWDEWSQRTIEPGLTIGHEFVGRVAELGSA-VTGYQIGQRVSAEGHI-VCGHCRNCRGGRPHLCPNTVGIGVNVNGAFAEYMVMPASNLWPIPDQIPSELAA 145          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_PYRHO (Probable L-threonine 3-dehydrogenase OS=Pyrococcus horikoshii GN=tdh PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13
Identity = 65/216 (30.09%), Postives = 99/216 (45.83%), Query Frame = 2
Query:  161 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRL--PLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA---PILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMG-LRVIAIDTGDDKRKLCASYGADKFVD-FEDHSDPEKFIKAIKDM 787
            PGEVL++V  + +C TDLH ++ +  A+ R+  P + GHE AG +V IG G +  ++VG  V ++     C  C  CR G    C   +  G   DG F +YAV  A+++   P  +P E A    P+  A  TV    ++ K+                      A A G   VI  +  D +R+L    GAD  ++ FE     E  +K + D+
Sbjct:   29 PGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPG-VEGIEVGDYVSVETHI-VCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPISGKS------VLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFE-----EDVVKEVMDI 231          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_FRATN (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. novicida (strain U112) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13
Identity = 50/150 (33.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  122 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNV-GIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 562
            + D P+P+       +VL+++  + +C TDLH +  D W      +P++ GHE AG +VA GDG +T++ +G  V G   L   C  C NCR G    C +    G +V G F +Y V  A +V  IPD +  + A+     G  ++ AL
Sbjct:   16 IDDAPIPEYGY---NDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDG-VTSVDIGDRVSGEGHLV--CGQCRNCRAGKRHLCRKTIGIGVNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTAL 159          
The following BLAST results are available for this feature:
BLAST of FC872123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
TDH_FRATM6.427e-1333.33L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATH6.427e-1333.33L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATF6.427e-1333.33L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRAT16.427e-1333.33L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_XANCP8.393e-1336.36L-threonine 3-dehydrogenase OS=Xanthomonas campest... [more]
TDH_XANCB8.393e-1336.36L-threonine 3-dehydrogenase OS=Xanthomonas campest... [more]
TDH_XANC88.393e-1336.36L-threonine 3-dehydrogenase OS=Xanthomonas campest... [more]
TDH_XANAC8.393e-1334.23L-threonine 3-dehydrogenase OS=Xanthomonas axonopo... [more]
TDH_PYRHO8.393e-1330.09Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
TDH_FRATN8.393e-1333.33L-threonine 3-dehydrogenase OS=Francisella tularen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2CH02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872123 ID=FC872123; Name=FC872123; organism=Citrus clementina; type=EST; length=788bp
GGGGACTCTCTCTTTCTCTCTTCACAACTCTACAGCAATCAAAACTATGT
CACAAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGAC
CACAATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGGC
TGACCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTAT
GCCACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCGT
CTACCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCGG
AGACGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAAT
GGCTCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGAG
GCTACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTTT
CCAACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGACG
GATTACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGTC
TATCGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCAT
TGTGGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCCG
CCATGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAAA
CTTTGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCGAGGATCACTC
GGATCCCGAGAAGTTTATCAAAGCGATCAAGGATATGT
back to top