FC872123

Overview
NameFC872123
Unique NameFC872123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: DHSO_BOMMO (Sorbitol dehydrogenase OS=Bombyx mori GN=SDH PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13
Identity = 60/235 (25.53%), Postives = 99/235 (42.13%), Query Frame = 2
Query:  101 HNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRL--PLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQ-CSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFV----DFEDHSDPEKFIKAIKD 784
            H AN   ++  PVP+  D    EVL+++D  G+C +D+  +         +  P+V GHEGAG +V +GD  +++L+VG  V I+     C  CE C+ G    C + + CS     G   +Y    A     +PD L +E+ A +    + ++ A   +K   G                    A    ++I  D    +       GAD  +    ++ D    EK +K + D
Sbjct:   10 HGANDVRIEKIPVPEIND---DEVLIKIDCVGICGSDVKLYSTGTCGADVIDKPIVIGHEGAGTVVKVGD-KVSSLRVGDRVAIE-PTQPCRSCELCKRGKYNLCVEPRYCSSMGAPGNLCRYYKHVADFCHKLPDNLTMEEGAAVQPLAIVIH-ACNRAKITLGSKIVILGAGPIGILCAMSAKAMGASKIILTDVVQSRLDAALELGADNVLLVRREYTDEEVVEKIVKLLGD 238          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: DHSO_BACHD (Sorbitol dehydrogenase OS=Bacillus halodurans GN=gutB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13
Identity = 49/167 (29.34%), Postives = 78/167 (46.71%), Query Frame = 2
Query:   83 ACVFKDHNANIDFVKDHPVPQQADLKPG--EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA---PILCAGVTVYRALLN 568
            A V   H      V++ P P      PG  +V ++V Y+GVC +D+H ++G +P     P+  GHE +G IV +G+G +T   VG  V  +     C  C  C  G    CS  +  G   DG+F +Y ++    +  +P G+    AA   P+ C    + +  +N
Sbjct:    3 ALVKTQHGTGHFAVQEKPEPT-----PGKHQVKIKVKYTGVCGSDIHTYEGHYPVAA--PVTLGHEFSGEIVELGEG-VTGFNVGDRVTSETTYSICGKCSYCTSGDYNLCSHRKGLGNQQDGSFAKYVIARQESLHHLPAGVDDRSAAMTEPLACTHHAIAKTSIN 161          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADH1_TRIRP (Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.096e-12
Identity = 56/223 (25.11%), Postives = 98/223 (43.95%), Query Frame = 2
Query:  164 GEVLVRVDYSGVCHTDLHAW--KGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQC------------SGYSVDG----------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 757
            GEV +++ ++ +CHTD++ W  KG  P  PR   + GHE  G + ++G+G +T+LK G +  +      C +C +C+      C+  +             S +S+ G          TF +Y V +A  V  I    PL++   + C   T   A +N +K +PG                     +   R+I +D    + +L   +G ++FV+ +DH  P
Sbjct:   36 GEVRLKILFTSLCHTDVYFWEAKGQTPLFPR---IFGHEAGGIVESVGEG-VTHLKPGDH-ALPVFTGECGECPHCKSEESNMCNLLRINTDRGVMINDNKSRFSIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARMSGASRIIGVDLVSSRFELAKKFGVNEFVNPKDHDKP 253          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: DOIAD_STRRY (2-deoxy-scyllo-inosamine dehydrogenase OS=Streptomyces rimosus subsp. paromomycinus GN=parE PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.432e-12
Identity = 45/134 (33.58%), Postives = 69/134 (51.49%), Query Frame = 2
Query:  128 DHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPI 529
            +  VP+ A   PGE LV++ Y+ +C +DL  +KG W      P+V GHE +G +V  G G      VGQNV +  L  +C  C +C  G    C+  Q  G++ DG   +Y      ++  +P+GL L +A  +
Sbjct:   16 ERDVPEPA---PGEALVKLAYNSICGSDLSFYKGVWHGFT-YPVVPGHEWSGTVVEAGGGAAD--LVGQNV-VGDLTVACGSCRHCTVGKPTLCADLQELGFTRDGACAEYMTVPTGNLHRLPEGLSLREATQV 142          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADH1B_UROHA (Alcohol dehydrogenase 1B OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.432e-12
Identity = 60/222 (27.03%), Postives = 91/222 (40.99%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSV---------------------DGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNS-KARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 757
            K  EV +++  SG+C +D H   G    K   P++ GHE AG + ++G+G +T++K G  V I      C +C +CR      C +++   ++                       GTF +Y V+    V  I    PLE+   I C   T Y A +NS K +PG                    AA   R+I ID   +K       GA + V+  D+  P
Sbjct:   32 KAHEVRIKILASGICRSDDHVLSG--ALKVNFPIILGHEAAGVVESVGEG-VTSMKPGDKV-IPIFLPQCGECNSCRHPRGNVCKKSELGPFTGLLYDGTSRFTYQGKPVYHFVRTGTFTEYTVAPEDSVVKIDASAPLEKVCLIGCGFSTGYGAAINSAKVQPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINKEKFPKAKELGATECVNPLDYKKP 249          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_RHILO (L-threonine 3-dehydrogenase OS=Rhizobium loti GN=tdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.870e-12
Identity = 50/150 (33.33%), Postives = 74/150 (49.33%), Query Frame = 2
Query:  119 FVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 562
            ++++ PVP+   + P +VL+++  + +C TD+H +  D W  K   +P+V GHE  G +   G   +T  KVGQ V  +     C  C NCR G    C      G +  G F +Y      +V PIPD +P E AA     G  V+ AL
Sbjct:   18 WMEEVPVPE---IGPNDVLIKIRKTAICGTDVHIYNWDQWAQKTVPVPMVTGHEFVGTVADFG-AAVTEYKVGQRVSGEGHI-VCGHCRNCRAGRGHLCRNTLGVGVNRPGAFGEYLAIPQHNVVPIPDDVPDEIAAIFDPLGNAVHTAL 162          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_RHIL3 (L-threonine 3-dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.870e-12
Identity = 52/150 (34.67%), Postives = 75/150 (50.00%), Query Frame = 2
Query:  119 FVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 562
            ++++ PVP+   + P +VL+RV  S +C TD+H W  D W  K   +P+V GHE +G I  IG   +T   VG+ V  +     C  C NCR G    C      G +  G+F ++      +V PIPD +  E AA     G  V+ AL
Sbjct:   18 WMENVPVPE---VGPNDVLIRVKKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFSGEIAEIG-SAVTRYHVGERVSGEGHI-VCGKCRNCRAGRGHLCRNTLGVGVNRPGSFGEFVCIPESNVVPIPDDISDEIAAIFDPFGNAVHTAL 162          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_RHIEC (L-threonine 3-dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.870e-12
Identity = 52/150 (34.67%), Postives = 75/150 (50.00%), Query Frame = 2
Query:  119 FVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 562
            ++++ PVP+   + P +VL+RV  S +C TD+H W  D W  K   +P+V GHE +G I  IG   +T   VG+ V  +     C  C NCR G    C      G +  G+F ++      +V PIPD +  E AA     G  V+ AL
Sbjct:   18 WMENVPVPE---VGPNDVLIRVKKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFSGEIAEIG-SAVTRYHVGERVSGEGHI-VCGKCRNCRAGRGHLCRNTLGVGVNRPGSFGEFVCIPESNVVPIPDDISDEIAAIFDPFGNAVHTAL 162          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_MESSB (L-threonine 3-dehydrogenase OS=Mesorhizobium sp. (strain BNC1) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.442e-12
Identity = 50/145 (34.48%), Postives = 70/145 (48.28%), Query Frame = 2
Query:  134 PVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 562
            P+P+   + P +VL++V  + +C TD+H W  D W  K   +PLV GHE  G +V +G   +T  ++GQ V  +     C  C NCR G    C      G    G F +Y      +V  IPD +P E AA     G  V+ AL
Sbjct:   23 PLPE---IGPNDVLIKVRKAAICGTDVHIWNWDEWARKTVPVPLVTGHEFVGEVVDVGSA-VTEYRIGQRVSGEGHI-VCGHCRNCRAGRGHLCRNTLGVGVHRPGAFAEYISLPQHNVVAIPDDVPDEIAAIFDPLGNAVHTAL 162          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_FRAP2 (L-threonine 3-dehydrogenase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.442e-12
Identity = 51/150 (34.00%), Postives = 78/150 (52.00%), Query Frame = 2
Query:  122 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WP-AKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNV-GIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 562
            + D P+P+       +VL+++  + +C TDLH +  D W  A   +P++ GHE AG +VA G+G +T++ VG  V G   L   C  C NCR G    C +    G +V G F +Y V  A +V  IPD +  + A+     G  ++ AL
Sbjct:   16 IDDAPMPEYGY---NDVLIKIKKTAICGTDLHIYNWDKWSQATIPVPMITGHEFAGEVVAKGNG-VTSVDVGDRVSGEGHLV--CGQCRNCRAGKRHLCRKTIGIGVNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTAL 159          
The following BLAST results are available for this feature:
BLAST of FC872123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
DHSO_BOMMO8.393e-1325.53Sorbitol dehydrogenase OS=Bombyx mori GN=SDH PE=2 ... [more]
DHSO_BACHD8.393e-1329.34Sorbitol dehydrogenase OS=Bacillus halodurans GN=g... [more]
ADH1_TRIRP1.096e-1225.11Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH... [more]
DOIAD_STRRY1.432e-1233.582-deoxy-scyllo-inosamine dehydrogenase OS=Streptom... [more]
ADH1B_UROHA1.432e-1227.03Alcohol dehydrogenase 1B OS=Uromastyx hardwickii P... [more]
TDH_RHILO1.870e-1233.33L-threonine 3-dehydrogenase OS=Rhizobium loti GN=t... [more]
TDH_RHIL31.870e-1234.67L-threonine 3-dehydrogenase OS=Rhizobium leguminos... [more]
TDH_RHIEC1.870e-1234.67L-threonine 3-dehydrogenase OS=Rhizobium etli (str... [more]
TDH_MESSB2.442e-1234.48L-threonine 3-dehydrogenase OS=Mesorhizobium sp. (... [more]
TDH_FRAP22.442e-1234.00L-threonine 3-dehydrogenase OS=Francisella philomi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CH02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872123 ID=FC872123; Name=FC872123; organism=Citrus clementina; type=EST; length=788bp
GGGGACTCTCTCTTTCTCTCTTCACAACTCTACAGCAATCAAAACTATGT
CACAAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGAC
CACAATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGGC
TGACCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTAT
GCCACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCGT
CTACCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCGG
AGACGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAAT
GGCTCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGAG
GCTACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTTT
CCAACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGACG
GATTACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGTC
TATCGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCAT
TGTGGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCCG
CCATGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAAA
CTTTGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCGAGGATCACTC
GGATCCCGAGAAGTTTATCAAAGCGATCAAGGATATGT
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