FC872123

Overview
NameFC872123
Unique NameFC872123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_THEON (Probable L-threonine 3-dehydrogenase OS=Thermococcus onnurineus (strain NA1) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12
Identity = 61/211 (28.91%), Postives = 94/211 (44.55%), Query Frame = 2
Query:  161 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRL--PLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVD-FEDHSDPEKFIKAIKD 784
            PGEVL++V  + +C TDLH ++ +  A+ R+  P + GHE AG ++ +G G  T + VG  +  +     C  C  C+      C   +  G  +DG F +YA+  A++    P  +P E A      G  V   L    A  G+                   A+    VI  +  + +R+L    GAD  V+ FE+  DP KF+  I D
Sbjct:   29 PGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVIEVGPGVDT-INVGDYISAETHI-VCGKCYACKHNRYHVCQNTKIFGVDMDGVFAEYAIVPAQNAWKNPKDMPPEYATLQEPLGNAVDTVLAGPIA--GRSTLITGAGPLGLLGIAVAKASGAYPVIVSEPSEFRRELAKKVGADYVVNPFEE--DPVKFVMDITD 233          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12
Identity = 64/234 (27.35%), Postives = 99/234 (42.31%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCS---QAQCSGYSVDG-------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGL-RVIAIDTGDDKRKLCASYGADKFVD-FEDHSDPEKFIKAIKDM 787
            K  EV ++++Y+ VCHTD +   G  P +   P V GHEGAG + ++GD  +T +K G +V   + A+ C  C+ C  G    C      Q  G   DG                   TF +Y V     V  I    PL+ A  + C   T + A L +                      Q A   G  ++IAID  + K++ C+ +GA  FV+  ED +  +  ++ + +M
Sbjct:   35 KAHEVRIKIEYTAVCHTDAYTLSGSDP-EGLFPCVLGHEGAGIVESVGDDVIT-VKPGDHVIALYTAE-CGKCKFCTSGKTNLCGAVRATQGKGVMPDGTTRFHNAKGEDIYHFMGCSTFSEYTVVADVSVVAIDPKAPLDAACLLGCGVTTGFGAALKTANVQKGDTVAVFGCGTVGLSVIQGAKLRGASKIIAIDINNKKKQYCSQFGATDFVNPKEDLAKDQTIVEKLIEM 265          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADH1_PEA (Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12
Identity = 55/223 (24.66%), Postives = 97/223 (43.50%), Query Frame = 2
Query:  164 GEVLVRVDYSGVCHTDLHAW--KGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQC------------SGYSVDG----------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 757
            GEV +++ ++ +CHTD++ W  KG  P  PR   + GHE  G + ++G+G +T+LK G +  +      C +C +C+      C   +             S +S+ G          TF +Y V +A  V  I    PL++   + C   T   A +N +K +PG                     +   R+I +D    + +L   +G ++FV+ ++H  P
Sbjct:   36 GEVRLKILFTSLCHTDVYFWEAKGQTPLFPR---IFGHEAGGIVESVGEG-VTHLKPGDH-ALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMLNDNKSRFSIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPKEHDKP 253          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_PYRFU (Probable L-threonine 3-dehydrogenase OS=Pyrococcus furiosus GN=tdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.166e-12
Identity = 42/122 (34.43%), Postives = 66/122 (54.10%), Query Frame = 2
Query:  161 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRL--PLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQA 520
            PGEVL+++  + +C TDLH ++ +  A+ R+  P + GHE AG +V +G G +  ++VG  V ++     C  C  C+ G    C   +  G   DG F +YAV  A++V   P  +P E A
Sbjct:   29 PGEVLIKILATSICGTDLHIYEWNEWAQTRIRPPQIMGHEVAGEVVEVGPG-VEGIEVGDYVSVETHI-VCGKCYACKRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNVWKNPKNIPPEYA 148          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADHX_OCTVU (Alcohol dehydrogenase class-3 OS=Octopus vulgaris PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.166e-12
Identity = 62/230 (26.96%), Postives = 99/230 (43.04%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQ---AQCSGYSVDG------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKA-RPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEKFIKAIK 781
            K GEV +++ +SGVCHTD +  +G  P +   P++ GHEGAG + +IG+G +T++K G  V I      C +C+ C       C +    Q  G   DG                  TF ++ V     +  +     L++   + C   T Y A LN+ A   G                    AA   R+I ID  + K ++   +G  +FV      +P+KF K+++
Sbjct:   33 KSGEVRIKILHSGVCHTDAYTLEGIDP-EGIFPVILGHEGAGIVESIGEG-VTSVKPGDTV-IPLYVPQCYECKFCLNPKTNLCQKIRVTQGKGVMPDGTTRFTCKGKEVFHFMGCSTFSEFTVVAEISIAKVNPKAALDKVCLLGCGISTGYGAALNTAAVEKGSNCAVWGLGAVGLAVAMGCKAAGAARIIGIDINESKFEIGKKFGITEFV------NPKKFCKSVQ 253          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.166e-12
Identity = 61/221 (27.60%), Postives = 91/221 (41.18%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSV--DG------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNS-KARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 757
            K  EV +++  +G+C TD H  KG   +K   P++ GHE  G + +IG+G +T +K G  V I      C +C  CR      C ++  +G  V  DG                  TF +Y V     V  I D  P E+   I C   T Y A + + K +PG                    +A   R+I ID   DK +   + GA + +  +D + P
Sbjct:   33 KTKEVRIKILATGICRTDDHVIKGTMVSK--FPVIVGHEATGIVESIGEG-VTTVKPGDKV-IPLFLPQCRECNACRNPDGNLCIRSDITGRGVLADGTTRFTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKP 249          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: Y053_HAEIN (Uncharacterized zinc-type alcohol dehydrogenase-like protein HI0053 OS=Haemophilus influenzae GN=HI0053 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 50/167 (29.94%), Postives = 80/167 (47.90%), Query Frame = 2
Query:   80 AACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQ---AAPILCAGVTVYRALLNS 571
            A C+ K +N     VK+ P P+++D    +VL++V+  G+C +D+ A++G  P     P + GHE  G ++  G G    ++VG  V +      C  C  C  G    C   +  G  +DG  Q+     A  +T +PD LP+ Q   A P+  A   ++R  L S
Sbjct:    7 AICLEKPNNV---VVKEVPYPEKSD---NDVLIQVESMGICGSDIGAYRGTNPLVT-YPRILGHEIVGRVIESGIGMSDGVRVGDRVIVDPYV-CCGQCYPCSIGRTNCCESLKVIGVHIDGGMQEVIRHPAHLLTKVPDNLPIHQLPLAEPLTIALHALHRTTLKS 165          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_XANC5 (L-threonine 3-dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=tdh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 51/149 (34.23%), Postives = 75/149 (50.34%), Query Frame = 2
Query:   83 ACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKPRLP-LVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA 523
            A V ++ N  I +++  PVP      P EVL++++ + +C TDLH +  D W  +   P L  GHE  G +  +G   +T  +VGQ V  +     C  C NCR G    C      G +V+G F +Y V  A ++  IPD +P E AA
Sbjct:    3 ALVKREANKGI-WLEQVPVPTPG---PNEVLIKLEKTAICGTDLHIYLWDEWSQRTIRPGLTIGHEFVGRVAELGSA-VTGYQVGQRVSAEGHI-VCGHCRNCRGGRPHLCPNTVGIGVNVNGAFAEYMVMPASNLWLIPDQIPSELAA 145          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_SINMW (L-threonine 3-dehydrogenase OS=Sinorhizobium medicae (strain WSM419) GN=tdh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 52/145 (35.86%), Postives = 71/145 (48.97%), Query Frame = 2
Query:  134 PVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 562
            PVP+   + P +VL+RV  S +C TD+H W  D W  K   +P+V GHE  G IV +G   +T   VG+ V  +     C  C NCR G    C      G +  G+F ++      +V  IPD +P E AA     G  V+ AL
Sbjct:   23 PVPE---VGPNDVLIRVRKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFMGEIVEVGP-AVTKHHVGERVSGEGHI-VCGKCRNCRAGRGHLCRNTLGVGVNRPGSFAEFVCLPEYNVVSIPDDVPDEIAAIFDPFGNAVHTAL 162          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: DOIAD_STRKN (2-deoxy-scyllo-inosamine dehydrogenase OS=Streptomyces kanamyceticus GN=kanE PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 44/136 (32.35%), Postives = 66/136 (48.53%), Query Frame = 2
Query:  125 KDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAI-GDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPI 529
            +D P P     +PGE LV + Y+ +C +DL  ++G W      P+V GHE +G +V I G        VG+NV +  L  +C +C  C  G    C   Q  G++ DG   +Y      ++ P+PD L L  A  +
Sbjct:   17 RDVPTP-----RPGEALVHIAYNSICGSDLSLYRGVWHGFG-YPVVPGHEWSGTVVEINGANGHDQSLVGKNV-VGDLTCACGNCAACGRGTPVLCENLQELGFTKDGACAEYMTIPVDNLRPLPDALSLRSACQV 145          
The following BLAST results are available for this feature:
BLAST of FC872123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
TDH_THEON3.189e-1228.91Probable L-threonine 3-dehydrogenase OS=Thermococc... [more]
FADH_YEAST3.189e-1227.35S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]
ADH1_PEA3.189e-1224.66Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1[more]
TDH_PYRFU4.166e-1234.43Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
ADHX_OCTVU4.166e-1226.96Alcohol dehydrogenase class-3 OS=Octopus vulgaris ... [more]
ADH7_HUMAN4.166e-1227.60Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]
Y053_HAEIN7.105e-1229.94Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
TDH_XANC57.105e-1234.23L-threonine 3-dehydrogenase OS=Xanthomonas campest... [more]
TDH_SINMW7.105e-1235.86L-threonine 3-dehydrogenase OS=Sinorhizobium medic... [more]
DOIAD_STRKN7.105e-1232.352-deoxy-scyllo-inosamine dehydrogenase OS=Streptom... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CH02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872123 ID=FC872123; Name=FC872123; organism=Citrus clementina; type=EST; length=788bp
GGGGACTCTCTCTTTCTCTCTTCACAACTCTACAGCAATCAAAACTATGT
CACAAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGAC
CACAATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGGC
TGACCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTAT
GCCACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCGT
CTACCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCGG
AGACGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAAT
GGCTCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGAG
GCTACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTTT
CCAACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGACG
GATTACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGTC
TATCGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCAT
TGTGGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCCG
CCATGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAAA
CTTTGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCGAGGATCACTC
GGATCCCGAGAAGTTTATCAAAGCGATCAAGGATATGT
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