FC872204

Overview
NameFC872204
Unique NameFC872204
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC872204 vs. ExPASy Swiss-Prot
Match: FADH_ECOLI (2,4-dienoyl-CoA reductase [NADPH] OS=Escherichia coli (strain K12) GN=fadH PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 55/182 (30.22%), Postives = 87/182 (47.80%), Query Frame = 1 
Query:  136 LVTPYNMGSLNLSHRVVLAPL-TRQRSYNNVPQPHAILYYSQRTTKGGLLIAEATGVSD-TAQGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIGHVGRVSNQDYQPNGQAPISCTDKPLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLID 675
            L  P ++G   L +RV++  + T    Y +  +  A  +Y++R   G  LI       D T  G      +    Q+   + I +AVH +GG    QI H GR S   YQP+  AP S    P+   +            P  L+ +EI Q++++F   A+ A EAG+DG+E+ G+ G+LI+
Sbjct:    6 LFAPLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAA-FYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQILHTGRYS---YQPHLVAP-SALQAPINRFV------------PHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLIN 170
The following BLAST results are available for this feature:
BLAST of FC872204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
FADH_ECOLI8.446e-1130.222,4-dienoyl-CoA reductase [NADPH] OS=Escherichia c... [more]

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Properties
Property NameValue
Genbank descriptionC05701G08SK AbsCOv1 Citrus clementina cDNA clone C05701G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872204 ID=FC872204; Name=FC872204; organism=Citrus clementina; type=EST; length=701bp
ATTTTATTTTCAGTCGCGTTAAGGATTCTCAATTTGCTTGTAATTCTACT
AAACATGGGAAACAGAGCAGAGGAGGCTAAGCAAAATCAAGAAGAGAACA
ACGGTAACATGGCCATTGAAACTCCCATCATCCCTCTTGTCACTCCTTAC
AATATGGGCAGTCTCAATCTTTCTCATAGAGTTGTTTTAGCACCACTGAC
TAGACAGAGATCATACAACAATGTTCCTCAGCCACATGCCATTTTGTATT
ACTCTCAAAGAACCACCAAAGGGGGTTTGCTTATAGCCGAAGCCACTGGA
GTTTCCGACACTGCTCAAGGGTATCCAGATACACCTGGTATCTGGACAAA
GGAGCAAGTTGAAGCATGGAAACCGATTGTAGATGCTGTTCATGCCAAAG
GTGGGATCTTCTTTTGTCAGATTGGGCACGTTGGCAGGGTTTCAAATCAA
GATTATCAGCCAAATGGTCAAGCTCCAATTTCCTGTACAGACAAGCCATT
GACACCTCAAATCCGCACTAATGGTGTTGATATTGCACAATTCACTCCTC
CAAGGCGGCTAACGACAGATGAAATCCCTCAAATTGTGAATGATTTCAGG
CTTGCTGCAAGAAATGCAATTGAGGCTGGTTTCGATGGCATTGAGCTCCA
CGGTGCACATGGCTTCCTAATTGACCATTTATGAAAGGATCAGTGAATGA
T
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