FC872218 | Citrus Genome Database

Overview


Name	FC872218
Unique Name	FC872218
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	638

Libraries


Library Name	Type
AbsCOv1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC872218 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.080e-22
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 1

Query:  205 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 396
            C GV+ L G+A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKISPSTDCS V+
Sbjct:   51 CGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114

HSP 2 Score: 39.6614 bits (91), Expect = 7.080e-22
Identity = 16/26 (61.54%), Postives = 20/26 (76.92%), Query Frame = 3

Query:  105 PVTNAITCGQVTASLAPCIPFLRTGG 182
            P   A+TCGQVTA LAPC+P+L+  G
Sbjct:   20 PHAEALTCGQVTAGLAPCLPYLQGRG 45

[Close]

BLAST of FC872218 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.199e-21
Identity = 38/64 (59.38%), Postives = 51/64 (79.69%), Query Frame = 1

Query:  205 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 396
            C+G+R++N  ARTT DR+AACNCLK+  G+I G+ PN AA LP +CGV +PYKIS ST+C+ V+
Sbjct:   28 CNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91

HSP 2 Score: 34.6538 bits (78), Expect = 1.199e-21
Identity = 13/21 (61.90%), Postives = 19/21 (90.48%), Query Frame = 3

Query:  120 ITCGQVTASLAPCIPFLRTGG 182
            ITCGQV+++LAPCI +++ GG
Sbjct:    1 ITCGQVSSNLAPCINYVKGGG 21

[Close]

BLAST of FC872218 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.616e-21
Identity = 45/63 (71.43%), Postives = 49/63 (77.78%), Query Frame = 1

Query:  205 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 393
            CSGVRSLN AARTT DR+AACNCLK A   IRG+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   59 CSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121

HSP 2 Score: 30.4166 bits (67), Expect = 2.616e-21
Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  117 AITCGQVTASLAPCIPFLRTGG 182
            A+TCGQV++++ PC+ + R  G
Sbjct:   30 AVTCGQVSSAIGPCLSYARGQG 51

[Close]

BLAST of FC872218 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.404e-21
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 1

Query:  205 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 396
            C+G++SLN AA+TTP RQAAC C+K A   I GI   +A+GLP +CGV IPYKISPSTDC+ V+
Sbjct:   57 CTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120

HSP 2 Score: 33.4982 bits (75), Expect = 3.404e-21
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  117 AITCGQVTASLAPCIPFLRTGG 182
            A+T GQVT SLAPCI +LR  G
Sbjct:   27 AVTSGQVTNSLAPCINYLRGSG 48

[Close]

BLAST of FC872218 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.437e-21
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 1

Query:  205 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 396
            C+G++SLN AA+TTP RQAAC C+K A   I GI   +A+GLP +CGV IPYKISPSTDC+ V+
Sbjct:   53 CTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116

HSP 2 Score: 33.4982 bits (75), Expect = 3.437e-21
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  117 AITCGQVTASLAPCIPFLRTGG 182
            A+T GQVT SLAPCI +LR  G
Sbjct:   23 AVTSGQVTNSLAPCINYLRGSG 44

[Close]

BLAST of FC872218 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.762e-21
Identity = 43/63 (68.25%), Postives = 48/63 (76.19%), Query Frame = 1

Query:  205 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 393
            CSGVRSLN AARTT DR+AACNCLK A   + G+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   57 CSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119

HSP 2 Score: 31.187 bits (69), Expect = 5.762e-21
Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  117 AITCGQVTASLAPCIPFLRTGG 182
            AI+CGQV +++APCI + R  G
Sbjct:   28 AISCGQVASAIAPCISYARGQG 49

[Close]

BLAST of FC872218 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 5.819e-21
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1

Query:  205 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 393
            C GVR+LN AA TT DRQ  C CLK+    + G++P++ AG+PS+CGV IPY ISPSTDCSRV
Sbjct:   56 CDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118

HSP 2 Score: 32.7278 bits (73), Expect = 5.819e-21
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 3

Query:  105 PVTNAITCGQVTASLAPCIPF 167
            P  +A+TCGQV + LAPCI +
Sbjct:   23 PAASAVTCGQVVSMLAPCIMY 43

[Close]

BLAST of FC872218 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.795e-20
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 1

Query:  205 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 393
            C+ VR LN AARTT D++ AC CLK+    + G+  N AAGLP++CGV IPYKISP+TDC+RV
Sbjct:   57 CNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119

HSP 2 Score: 33.113 bits (74), Expect = 2.795e-20
Identity = 12/19 (63.16%), Postives = 17/19 (89.47%), Query Frame = 3

Query:  120 ITCGQVTASLAPCIPFLRT 176
            +TCGQVT +LAPC+ +LR+
Sbjct:   28 LTCGQVTGALAPCLGYLRS 46

[Close]

BLAST of FC872218 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.823e-20
Identity = 40/64 (62.50%), Postives = 46/64 (71.88%), Query Frame = 1

Query:  205 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 396
            C GV+ L GAA+T  DR+ AC CLK A  +I+GI    AAGLP  CGV IPYKISPSTDCS V+
Sbjct:   51 CGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114

HSP 2 Score: 34.2686 bits (77), Expect = 2.823e-20
Identity = 12/26 (46.15%), Postives = 19/26 (73.08%), Query Frame = 3

Query:  105 PVTNAITCGQVTASLAPCIPFLRTGG 182
            P   +++CG+VT+ LAPC+P+L   G
Sbjct:   20 PHAESLSCGEVTSGLAPCLPYLEGRG 45

[Close]

BLAST of FC872218 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.823e-20
Identity = 38/64 (59.38%), Postives = 44/64 (68.75%), Query Frame = 1

Query:  205 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 396
            C GV+ L G A+TT DRQ AC CLK A  +  G+    AA LPS C V IPYKISPSTDCS+V+
Sbjct:   51 CGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114

HSP 2 Score: 38.891 bits (89), Expect = 2.823e-20
Identity = 15/26 (57.69%), Postives = 20/26 (76.92%), Query Frame = 3

Query:  105 PVTNAITCGQVTASLAPCIPFLRTGG 182
            P   A+TCGQVT++LAPC+P+L   G
Sbjct:   20 PHAEALTCGQVTSTLAPCLPYLMNRG 45

The following BLAST results are available for this feature:

BLAST of FC872218 vs. ExPASy Swiss-Prot

BLAST of FC872218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73


Match Name	E-value	Identity	Description
NLTP1_SOLPN	7.080e-22	62.50	Non-specific lipid-transfer protein 1 OS=Solanum p...	[more]
NLTP1_PRUDO	1.199e-21	59.38	Non-specific lipid-transfer protein 1 OS=Prunus do...	[more]
NLTP2_SORBI	2.616e-21	71.43	Non-specific lipid-transfer protein 2 OS=Sorghum b...	[more]
NLTP2_GOSHI	3.404e-21	62.50	Non-specific lipid-transfer protein OS=Gossypium h...	[more]
NLTP1_GOSHI	3.437e-21	62.50	Non-specific lipid-transfer protein OS=Gossypium h...	[more]
NLTP_MAIZE	5.762e-21	68.25	Non-specific lipid-transfer protein OS=Zea mays PE...	[more]
NLTP4_ORYSJ	5.819e-21	61.90	Non-specific lipid-transfer protein 4 OS=Oryza sat...	[more]
NLTP_DAUCA	2.795e-20	60.32	Non-specific lipid-transfer protein OS=Daucus caro...	[more]
NLTP2_SOLLC	2.823e-20	62.50	Non-specific lipid-transfer protein 2 OS=Solanum l...	[more]
NLTP2_SOLPN	2.823e-20	59.38	Non-specific lipid-transfer protein 2 OS=Solanum p...	[more]

Pages

Properties


Property Name	Value
Genbank description	C05701H11SK AbsCOv1 Citrus clementina cDNA clone C05701H11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC872218 ID=FC872218; Name=FC872218; organism=Citrus clementina; type=EST; length=638bp
GAACCTGATAACTCCCTATAACCAAGCAAAAGCCTCCCTGAAGAATCCTC
ATGGCTGCTCTTAAGCTTGTTTGCGCTTTGCTTTTGTGCATTCTGGTGAC
TGCCCCGGTGACTAATGCCATAACATGCGGGCAGGTGACAGCCTCCTTGG
CTCCATGCATCCCTTTCTTGAGGACTGGAGGGCGTTTTCCTCCACCGCCA
TGCGTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTG
ACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTACGGAACAATCCGC
GGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGAGTCAG
AATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCTAGGGTCAGGTGAA
GTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATA
AATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGAACGAGTCTCCAC
TTGTATGAGTTTCACTCTCATGTCATGTTTGTATATTTGCTTTTTATGTC
ATATTAAATATGAAAACGCGATCTGAGTTTTGAGTGATTAATTATAGGTA
TTTTGTGGTATGATCATGCGCCATTGTATCTCAGCTTT