FC872229

Overview
NameFC872229
Unique NameFC872229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length478
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC872229 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.345e-29
Identity = 61/81 (75.31%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:    6 KYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVG-VFRKLDTDGKGNAQGHLMVNYQFVNCGD 245
            KYGWTAFCGP G  GQAACGKCLRVTN  TGAQ T RIVDQC+NGGLDLD   VF K+DT+G G  QGHL VNYQFV+C D
Sbjct:   68 KYGWTAFCGPAGAHGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 148
[Close]
BLAST of FC872229 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.718e-29
Identity = 59/81 (72.84%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:    6 KYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVG-VFRKLDTDGKGNAQGHLMVNYQFVNCGD 245
            KYGWTAFCGP G  GQA+CGKCL+VTN  TGAQ T RIVDQC+NGGLDLD   VF K+DT+G G  QGHL VNYQFV+C D
Sbjct:   66 KYGWTAFCGPAGAHGQASCGKCLQVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 146
The following BLAST results are available for this feature:
BLAST of FC872229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
WHW2_WHEAT1.345e-2975.31Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
WHW1_WHEAT8.718e-2972.84Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AA11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1AA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872229 ID=FC872229; Name=FC872229; organism=Citrus clementina; type=EST; length=478bp
GGGGGAAGTATGGATGGACTGCCTTCTGTGGCCCTGTTGGACCTCGTGGA
CAAGCTGCTTGTGGCAAGTGCTTAAGGGTGACTAATAGAGGGACAGGAGC
TCAAGCAACGGTGAGAATTGTTGATCAGTGCAGCAATGGCGGTCTAGATT
TGGATGTCGGTGTTTTCCGGAAGCTGGATACTGATGGAAAAGGCAATGCT
CAAGGTCACCTCATGGTGAATTACCAGTTTGTTAACTGCGGAGATTGAAA
CATTTGAATATTAAAAAAAAAAAAAAAAAACCAACATAATAAGAATAATA
ATTATGGTGTGTTGATCATATATAAATCAACCTTATGATTATAGAATAAA
AATTCACAATAATTTGTGATCATGAATGTATTGTTCATGCAAAGACTGCG
TGCATGGACCTTTAATTACAGTGTAGTTCTCTACTAAAGTCCTTCTGCTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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