FC872230

Overview
NameFC872230
Unique NameFC872230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872230 vs. ExPASy Swiss-Prot
Match: ZNT5_HUMAN (Zinc transporter 5 OS=Homo sapiens GN=SLC30A5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 44/138 (31.88%), Postives = 72/138 (52.17%), Query Frame = 1
Query:    1 GVCLHVLADSIRSAGLILASWFLS-LGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVKKGVDDRPILQFVHGLYHDLGVQDLTVQID 411
            GV LHVLAD++ S G+I+++  +   G   A+ LC   +++ +F+ V+PL K    +LL   PP      L     +I   E +       FW      V G++ +QV   V ++ I+Q V G+  D GV +LT+Q++
Sbjct:  591 GVFLHVLADTLGSIGVIVSTVLIEQFGWFIADPLCSLFIAILIFLSVVPLIKDACQVLLLRLPPEY-EKELHIALEKIQKIEGLISYRDPHFWRHSASIVAGTIHIQVTSDVLEQRIVQQVTGILKDAGVNNLTIQVE 727          
BLAST of FC872230 vs. ExPASy Swiss-Prot
Match: ZNT5_MOUSE (Zinc transporter 5 OS=Mus musculus GN=Slc30a5 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 45/138 (32.61%), Postives = 72/138 (52.17%), Query Frame = 1
Query:    1 GVCLHVLADSIRSAGLILASWFLS-LGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVKKGVDDRPILQFVHGLYHDLGVQDLTVQID 411
            GV LHVLAD++ S G+I+++  +   G   A+ LC   ++V +F+ V+PL K    +LL   PP      L     +I   E +       FW      V G++ +QV   V ++ I+Q V G+  D GV +LT+Q++
Sbjct:  587 GVFLHVLADTLGSIGVIVSTVLIEQFGWFIADPLCSLFIAVLIFLSVIPLIKDACQVLLLRLPPD-HEKELHIALEKIQKIEGLISYRDPHFWRHSASIVAGTIHIQVTSEVLEQRIVQQVTGILKDAGVNNLTIQVE 723          
BLAST of FC872230 vs. ExPASy Swiss-Prot
Match: ZNT5_DANRE (Zinc transporter 5 OS=Danio rerio GN=slc30a5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.144e-11
Identity = 42/138 (30.43%), Postives = 71/138 (51.45%), Query Frame = 1
Query:    1 GVCLHVLADSIRSAGLILASWFL-SLGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVKKGVDDRPILQFVHGLYHDLGVQDLTVQID 411
            GV LHVLAD++ S G+I+++  +   G   A+ +C   +S  +F+ V+PL K    +LL   PP      L+    +I   E V       FW      + G++ LQ+   V ++ ++Q V  +  D GV +LT+Q++
Sbjct:  601 GVFLHVLADTLGSVGVIISTILIRQFGWLIADPICSLFISTLIFLSVIPLLKDACEVLLLRMPPQ-HEKELNFALEKIQKIEGVLSYRDPHFWRHSASVIAGTIHLQLMSDVVEQRVIQQVSAVLKDAGVNNLTIQLE 737          
BLAST of FC872230 vs. ExPASy Swiss-Prot
Match: ZNT5_CHICK (Zinc transporter 5 OS=Gallus gallus GN=SLC30A5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.144e-11
Identity = 45/138 (32.61%), Postives = 71/138 (51.45%), Query Frame = 1
Query:    1 GVCLHVLADSIRSAGLILASWFL-SLGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVKKGVDDRPILQFVHGLYHDLGVQDLTVQID 411
            GV LHVLAD++ S G+I+++ F+   G   A+ LC   ++  +F+ V+PL K    +LL   PP      L     +I   + V       FW      V G++ +QV   V ++ I+Q V  +  D GV +LTVQ++
Sbjct:  596 GVFLHVLADTLGSVGVIVSTTFIQQFGWLIADPLCSLFIATLIFLSVIPLLKDACQVLLLRIPPE-QEKDLHAALEKIQKIDGVISYRDPHFWCHSASVVAGTIHVQVVSDVMEQRIVQQVTAILKDAGVNNLTVQVE 732          
The following BLAST results are available for this feature:
BLAST of FC872230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ZNT5_HUMAN1.860e-1131.88Zinc transporter 5 OS=Homo sapiens GN=SLC30A5 PE=1... [more]
ZNT5_MOUSE2.429e-1132.61Zinc transporter 5 OS=Mus musculus GN=Slc30a5 PE=2... [more]
ZNT5_DANRE4.144e-1130.43Zinc transporter 5 OS=Danio rerio GN=slc30a5 PE=2 ... [more]
ZNT5_CHICK4.144e-1132.61Zinc transporter 5 OS=Gallus gallus GN=SLC30A5 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1AB01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1AB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872230 ID=FC872230; Name=FC872230; organism=Citrus clementina; type=EST; length=638bp
GGGGTTTGCTTGCATGTTCTTGCAGATTCTATTCGCAGTGCAGGTTTGAT
ATTGGCATCTTGGTTTTTGTCCCTTGGGGTCCAGAATGCTGAAGTTTTGT
GTTTGGGGATAGTTTCAGTTGCAGTCTTCATGCTTGTCATGCCACTATTC
AAAGTGACTGGTGGTATCTTGCTTCAGATGGCACCTCCTAGCATTCCATC
TTCAGCATTGAGTAAATGTTGGAGACAGATTGTTTCTCGGGAAGATGTTA
CAGAAGTTTCCCAAGCCCGTTTTTGGGAGCTAGTGCCTGGCCATGTTGTT
GGTTCTCTCTCACTTCAGGTGAAGAAGGGAGTGGATGACCGCCCAATACT
TCAATTTGTGCATGGTTTATACCACGATTTAGGAGTACAAGATTTGACAG
TGCAAATTGATTATGATTGAGCTTTAATCATTTGTCTTTCAGTATTTCTT
GCAATTGACCGTTAAAGAATAGCTTTAGATTGAAGCCATTATCACTTGTA
GCTGCTGTTGTCCCTCAAGCACTTGTGTTAGTAGTAGCAAGATTTTGAAT
CAATTTCTATGTAGTTAAAGATCATTTTCAGTAATACACATACTGTAATT
TATTCATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top