FC872261

Overview
NameFC872261
Unique NameFC872261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872261 vs. ExPASy Swiss-Prot
Match: BGAL5_ARATH (Beta-galactosidase 5 OS=Arabidopsis thaliana GN=BGAL5 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.090e-28
Identity = 58/111 (52.25%), Postives = 75/111 (67.57%), Query Frame = 3
Query:   30 KLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXXXTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRT 362
            K P+TWYK  F  P GN+PLAL++ +MGKG  WINGQSIGR W                TY + KC++  G+P+Q WYHVPRSWLKP GNLLV+FE+ GG+   +S++KR+
Sbjct:  621 KQPLTWYKAYFDAPRGNEPLALDLKSMGKGQAWINGQSIGRYW-MAFAKGDCGSCNYAGTYRQNKCQSGCGEPTQRWYHVPRSWLKPKGNLLVLFEELGGDISKVSVVKRS 730          
BLAST of FC872261 vs. ExPASy Swiss-Prot
Match: BGAL4_ORYSJ (Beta-galactosidase 4 OS=Oryza sativa subsp. japonica GN=Os02g0219200 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.190e-27
Identity = 58/110 (52.73%), Postives = 71/110 (64.55%), Query Frame = 3
Query:   36 PMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXXXTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRTT 365
            P+TW+K  F  P GNDP+AL+MG+MGKG +W+NG  +GR W                TY E KCR+  G  SQ WYHVPRSWLKP GNLLVV E++GG+   +SL  RTT
Sbjct:  621 PLTWHKAFFNAPAGNDPVALDMGSMGKGQLWVNGHHVGRYWSYKASGGCGGCSYAG-TYHEDKCRSNCGDLSQRWYHVPRSWLKPGGNLLVVLEEYGGDLAGVSLATRTT 729          
BLAST of FC872261 vs. ExPASy Swiss-Prot
Match: BGAL4_ORYSI (Beta-galactosidase 4 OS=Oryza sativa subsp. indica GN=OsI_006270 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.190e-27
Identity = 58/110 (52.73%), Postives = 71/110 (64.55%), Query Frame = 3
Query:   36 PMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXXXTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRTT 365
            P+TW+K  F  P GNDP+AL+MG+MGKG +W+NG  +GR W                TY E KCR+  G  SQ WYHVPRSWLKP GNLLVV E++GG+   +SL  RTT
Sbjct:  621 PLTWHKAFFNAPAGNDPVALDMGSMGKGQLWVNGHHVGRYWSYKASGGCGGCSYAG-TYHEDKCRSNCGDLSQRWYHVPRSWLKPGGNLLVVLEEYGGDLAGVSLATRTT 729          
BLAST of FC872261 vs. ExPASy Swiss-Prot
Match: BGAL5_ORYSJ (Beta-galactosidase 5 OS=Oryza sativa subsp. japonica GN=Os03g0165400 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.316e-26
Identity = 56/109 (51.38%), Postives = 72/109 (66.06%), Query Frame = 3
Query:   36 PMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXXXTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRT 362
            P+ WY+  F  P G++PLAL+MG+MGKG +WINGQSIGR W                +Y   KC+   G+P+Q WYHVPRSWL+P+ NLLVVFE+ GG+   I+L KRT
Sbjct:  618 PLAWYRAYFDTPSGDEPLALDMGSMGKGQIWINGQSIGRYWTAYAEGDCKGCHYTG-SYRAPKCQAGCGQPTQRWYHVPRSWLQPTRNLLVVFEELGGDSSKIALAKRT 725          
BLAST of FC872261 vs. ExPASy Swiss-Prot
Match: BGAL8_ARATH (Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BGAL8 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.244e-26
Identity = 57/117 (48.72%), Postives = 71/117 (60.68%), Query Frame = 3
Query:   21 LALKLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXXX--TYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRTT 365
            L  K P+ WYKTTF  P G++P+A++    GKG+ W+NGQSIGR WP                 +Y   KC    GKPSQ  YHVPRSWLKPSGN+LV+FE+ GG+P  IS   + T
Sbjct:  621 LPTKQPLIWYKTTFDAPSGSEPVAIDFTGTGKGIAWVNGQSIGRYWPTSIAGNGGCTESCDYRGSYRANKCLKNCGKPSQTLYHVPRSWLKPSGNILVLFEEMGGDPTQISFATKQT 737          
BLAST of FC872261 vs. ExPASy Swiss-Prot
Match: BGAL3_ORYSJ (Beta-galactosidase 3 OS=Oryza sativa subsp. japonica GN=Os01g0875500 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.931e-26
Identity = 54/111 (48.65%), Postives = 70/111 (63.06%), Query Frame = 3
Query:   36 PMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXXX--TYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRT 362
            PMTWYK    VP G+DP+ L+M +MGKG+ W+NG +IGR WP                 T++  KCR   G+P+Q WYHVPRSW  PSGN LV+FE+ GG+P  I+  +RT
Sbjct:  627 PMTWYKVNVDVPQGDDPVGLDMQSMGKGLAWLNGNAIGRYWPRISPVSDRCTSSCDYRGTFSPNKCRRGCGQPTQRWYHVPRSWFHPSGNTLVIFEEKGGDPTKITFSRRT 737          
BLAST of FC872261 vs. ExPASy Swiss-Prot
Match: BGA15_ORYSJ (Beta-galactosidase 15 OS=Oryza sativa subsp. japonica GN=Os12g0429200 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.455e-25
Identity = 52/106 (49.06%), Postives = 66/106 (62.26%), Query Frame = 3
Query:   36 PMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXXX-TYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISL 350
            P TWYKT F  P G DP+A+++G+MGKG  W+NG  IGR W                  Y E+KC++  G P+Q WYH+PR WLK S NLLV+FE+ GG+P  ISL
Sbjct:  683 PFTWYKTMFSTPKGTDPVAIDLGSMGKGQAWVNGHLIGRYWSLVAPESGCSSSCYYPGAYNERKCQSNCGMPTQNWYHIPREWLKESDNLLVLFEETGGDPSLISL 788          
BLAST of FC872261 vs. ExPASy Swiss-Prot
Match: BGAL9_ORYSJ (Beta-galactosidase 9 OS=Oryza sativa subsp. japonica GN=Os06g0573600 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.481e-25
Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = 3
Query:   30 KLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXXXTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRTT 365
            K P+TW++  F  P G  P+AL++G+MGKG  W+NG  IGR W                TY+EKKC+   G  SQ WYHVPRSWL PSGNL+V+ E++GG+   ++L+ RTT
Sbjct:  605 KQPVTWHRAYFNAPAGGAPVALDLGSMGKGQAWVNGHLIGRYWSYKASGNCGGCSYAG-TYSEKKCQANCGDASQRWYHVPRSWLNPSGNLVVLLEEFGGDLSGVTLMTRTT 715          
BLAST of FC872261 vs. ExPASy Swiss-Prot
Match: BGA10_ARATH (Beta-galactosidase 10 OS=Arabidopsis thaliana GN=BGAL10 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.042e-23
Identity = 54/115 (46.96%), Postives = 66/115 (57.39%), Query Frame = 3
Query:   30 KLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXXXT-----YTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKR 359
            K P+TWYK     P G++P+ L+M +MGKGM W+NG+ IGR WP                     +   KC T  G+PSQ WYHVPRSW K SGN LV+FE+ GG P  I L KR
Sbjct:  622 KQPLTWYKVVIEPPSGSEPVGLDMISMGKGMAWLNGEEIGRYWPRIARKNSPNDECVKECDYRGKFMPDKCLTGCGEPSQRWYHVPRSWFKSSGNELVIFEEKGGNPMKIKLSKR 736          
BLAST of FC872261 vs. ExPASy Swiss-Prot
Match: BGAL6_ORYSJ (Beta-galactosidase 6 OS=Oryza sativa subsp. japonica GN=Os03g0255100 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.033e-23
Identity = 52/112 (46.43%), Postives = 66/112 (58.93%), Query Frame = 3
Query:   36 PMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWP--XXXXXXXXXXXXXXXTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRTT 365
            P+ WYKT F  P G+DP+A++   MGKG  W+NGQSIGR WP                  Y+  KC    G+PSQ  YHVPRS+L+P  N LV+FE++GG+P  IS   R T
Sbjct:  635 PLIWYKTKFTAPAGDDPVAIDFTGMGKGEAWVNGQSIGRYWPTNLAPQSGCVNSCNYRGAYSSNKCLKKCGQPSQTLYHVPRSFLQPGSNDLVLFEQFGGDPSMISFTTRQT 746          
The following BLAST results are available for this feature:
BLAST of FC872261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
BGAL5_ARATH4.090e-2852.25Beta-galactosidase 5 OS=Arabidopsis thaliana GN=BG... [more]
BGAL4_ORYSJ1.190e-2752.73Beta-galactosidase 4 OS=Oryza sativa subsp. japoni... [more]
BGAL4_ORYSI1.190e-2752.73Beta-galactosidase 4 OS=Oryza sativa subsp. indica... [more]
BGAL5_ORYSJ1.316e-2651.38Beta-galactosidase 5 OS=Oryza sativa subsp. japoni... [more]
BGAL8_ARATH2.244e-2648.72Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BG... [more]
BGAL3_ORYSJ2.931e-2648.65Beta-galactosidase 3 OS=Oryza sativa subsp. japoni... [more]
BGA15_ORYSJ1.455e-2549.06Beta-galactosidase 15 OS=Oryza sativa subsp. japon... [more]
BGAL9_ORYSJ2.481e-2547.32Beta-galactosidase 9 OS=Oryza sativa subsp. japoni... [more]
BGA10_ARATH1.042e-2346.96Beta-galactosidase 10 OS=Arabidopsis thaliana GN=B... [more]
BGAL6_ORYSJ3.033e-2346.43Beta-galactosidase 6 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DB01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2DB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872261 ID=FC872261; Name=FC872261; organism=Citrus clementina; type=EST; length=783bp
GGGGGGCACAGGGAACATCGTTGGCCCTAAAATTACCGATGACGTGGTAC
AAGACTACTTTCATTGTACCGCCAGGCAACGACCCGTTAGCTTTAAACAT
GGGTGCAATGGGAAAGGGGATGGTTTGGATCAATGGTCAAAGTATTGGGC
GCCGCTGGCCTGGATATAGAGGAAATGGAAATTGTGGTGGTTGTAATTAT
GCTGGAACTTACACCGAGAAGAAATGCCGAACTTACTGGGGAAAGCCCTC
TCAACCATGGTATCACGTTCCCCGCTCATGGCTGAAGCCGAGTGGAAACC
TGTTGGTTGTGTTTGAAAAATGGGGCGGTGAACCACATTGGATCTCTTTG
CTCAAGAGAACAACATAAACAGCTACAACAATTATTTTCTTTTTCTTTTT
CTCATTCTTCAATAATTCAAGCATACGCTTCCCTCATTTGCCAAGGTGAT
GATGGTTTGACTCCGACAAACGGGCAAACCAAAGTGTCCAACCATACCCA
TAATCTGGCCAAAGCCAAGAAGTATAGATTGTGAAGTTGTTGCAAGGATG
CTCCTTGTTGTATGTACATAGTCATATTCAAGCTATATATTTGTCAATAT
AGCTCTGCAAGCATACTTAAAGGTCATTCAGTCTGATAGGCAAAAGTGTT
AGTTCCGCAAACATTCATGTACGCTCGCTGGGTTTCACTCTTCATCATCT
ACAAGTTAATAGTGGAAATCTTTTATTTCCTTGTCATTTAAAAATAAGTG
TGAAAGTAATACATAGCAGCTTTTGAATTGCAT
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