FC872292

Overview
NameFC872292
Unique NameFC872292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872292 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.050e-33
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 3
Query:    3 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 314
            V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  +  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG+NLDC NQR +G  L+   M
Sbjct:  219 VISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLLVDIM 322          
BLAST of FC872292 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.792e-33
Identity = 61/101 (60.40%), Postives = 77/101 (76.24%), Query Frame = 3
Query:    3 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMA 305
            V+SFK+A+WFWMT Q PKPSCH+VI  +W PS+ ++ AGR+PGYG+ TNIINGG+ECG G +D V NRIGF+  +C   GI  G NLDCY+QRP+   L A
Sbjct:  232 VVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of FC872292 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 2.340e-33
Identity = 60/94 (63.83%), Postives = 71/94 (75.53%), Query Frame = 3
Query:    6 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 287
            +SFK+A WFWMT Q PKPSCH VI  +W PSA +  AGR+PGYG  TNIINGG+ECG G +D V +RIGF+  +C   G+  GDNLDCYNQRPY
Sbjct:  224 VSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of FC872292 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.340e-33
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 3
Query:    6 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 314
            +SFKSA WFWMT Q PKPSCH VII  W PS+ +  AGR+PGYG+ TNIINGG+ECG+G N  V +RIGF+  +C   G+  G+NLDCYNQ P+G  +   SM
Sbjct:  222 ISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 324          
BLAST of FC872292 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.056e-33
Identity = 59/104 (56.73%), Postives = 80/104 (76.92%), Query Frame = 3
Query:    3 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 314
            V+SFK+A+WFWMT Q PKPSCH+VII  W PS+ +  A RLPG+G+ TNIINGG+ECG+G ++ V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  ++
Sbjct:  225 VISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328          
BLAST of FC872292 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 5.213e-33
Identity = 63/100 (63.00%), Postives = 73/100 (73.00%), Query Frame = 3
Query:    3 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNL 299
            V+SFK+AIWFWM  Q PKPSCH VI   W PSA ++ AGR+PGYG+ TNIINGGIECGQGG N A  +RIGF+  +C   G   G NLDCY QRP+G  L
Sbjct:  234 VISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFGYGL 333          
BLAST of FC872292 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.213e-33
Identity = 62/103 (60.19%), Postives = 73/103 (70.87%), Query Frame = 3
Query:    6 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 314
            +SFKSA WFWMT Q PKPSCH+VII  W PS  +  AGR+PG+GL TNIINGG+ECGQG N  V +RIGF+  +C   G+  G+NLDCYNQR Y       SM
Sbjct:  219 ISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSYNNGPSVDSM 321          
BLAST of FC872292 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 6.808e-33
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = 3
Query:    3 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM*SS 323
            V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ +V A RLPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G+NLDCY+Q P+G +L+   + +S
Sbjct:  221 VISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of FC872292 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.891e-33
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = 3
Query:    6 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 290
            +SFK+AIWFWMT Q  KPS H+VII  W PSA +  A R+PGYG+ TNIINGGIECG G NDAV +RIG++  +CG   + PG+NLDCYNQR +G
Sbjct:  157 ISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of FC872292 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.161e-32
Identity = 61/107 (57.01%), Postives = 79/107 (73.83%), Query Frame = 3
Query:    3 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM*SS 323
            V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ +V A RLPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G+NLDCY+Q P+G +L    + +S
Sbjct:  220 VISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLFLSDLVTS 326          
The following BLAST results are available for this feature:
BLAST of FC872292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHIC_SOLLC1.050e-3357.69Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI9_ORYSJ1.792e-3360.40Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_ORYSJ2.340e-3363.83Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_GOSHI2.340e-3359.22Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHIT_SOLTU3.056e-3356.73Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI6_POPTR5.213e-3363.00Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI1_THECC5.213e-3360.19Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIT_PHAVU6.808e-3357.01Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIQ_TOBAC8.891e-3363.16Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI5_PHAVU1.161e-3257.01Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1AF04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1AF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872292 ID=FC872292; Name=FC872292; organism=Citrus clementina; type=EST; length=509bp
GGGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCA
CCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGC
AATTGAAGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATA
TAATCAACGGTGGAATTGAATGTGGCCAAGGTGGGAATGACGCTGTACGC
AACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCC
TGGTGACAATCTTGATTGCTACAACCAACGGCCTTATGGCCTTAATCTGA
TGGCACAATCTATGTGATCATCATGATCAAGGTTTTAGTAAAATAAGCTT
AATAAAAGCTACTTAATAAAAACTTTAGATGTCACAGTTGTAGGTGGACA
ACTAAATTATTCGTTTGTTACGCTCTTATTGCAAGTAAATTAAATAAGAC
TGATCCAACATGGATCAATGAGTCTTCTCCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
back to top