FC872303

Overview
NameFC872303
Unique NameFC872303
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length895
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC872303 vs. ExPASy Swiss-Prot
Match: 5NTC_MOUSE (Cytosolic purine 5'-nucleotidase OS=Mus musculus GN=Nt5c2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.549e-11
Identity = 49/196 (25.00%), Postives = 84/196 (42.86%), Query Frame = 2 
Query:    5 VIAQANKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHG-CLKSFLQITKWNGPEVIYFGDHLFSD-LRGPSKAGWRTAAIIHELESEIRIQNDETYRFE--QAKFHIIQELLGKLHATVANSQRTEACQLLLAELNEERQKARRMMKKMFNKSFGATFLTDTGQESAFAYHIHRYADVYTSKAENFLLYP 580
            ++  A KP F+      R  DT+   L        + + I Y G    +   +    G +++Y GDH+F D L+   + GWRT  +I EL  E+ +  D++  FE  Q+    + EL   L ++        + Q  + ++  +      MM  +F             +++ FA  + RYAD+Y +   N L YP
Sbjct:  286 ILVDARKPLFFGEGTVLRQVDTKTGKLKIGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSNERPDISSIQRRIKKVTHDMDMCYGMMGSLFRSG---------SRQTLFASQVMRYADLYAASFINLLYYP 472
[Close]
BLAST of FC872303 vs. ExPASy Swiss-Prot
Match: 5NTC_HUMAN (Cytosolic purine 5'-nucleotidase OS=Homo sapiens GN=NT5C2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.549e-11
Identity = 49/196 (25.00%), Postives = 84/196 (42.86%), Query Frame = 2 
Query:    5 VIAQANKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHG-CLKSFLQITKWNGPEVIYFGDHLFSD-LRGPSKAGWRTAAIIHELESEIRIQNDETYRFE--QAKFHIIQELLGKLHATVANSQRTEACQLLLAELNEERQKARRMMKKMFNKSFGATFLTDTGQESAFAYHIHRYADVYTSKAENFLLYP 580
            ++  A KP F+      R  DT+   L        + + I Y G    +   +    G +++Y GDH+F D L+   + GWRT  +I EL  E+ +  D++  FE  Q+    + EL   L ++        + Q  + ++  +      MM  +F             +++ FA  + RYAD+Y +   N L YP
Sbjct:  286 ILVDARKPLFFGEGTVLRQVDTKTGKLKIGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSNERPDISSIQRRIKKVTHDMDMCYGMMGSLFRSG---------SRQTLFASQVMRYADLYAASFINLLYYP 472
[Close]
BLAST of FC872303 vs. ExPASy Swiss-Prot
Match: 5NTC_XENTR (Cytosolic purine 5'-nucleotidase OS=Xenopus tropicalis GN=nt5c2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11
Identity = 49/196 (25.00%), Postives = 83/196 (42.35%), Query Frame = 2 
Query:    5 VIAQANKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFL-QITKWNGPEVIYFGDHLFSD-LRGPSKAGWRTAAIIHELESEIRIQNDETYRFE--QAKFHIIQELLGKLHATVANSQRTEACQLLLAELNEERQKARRMMKKMFNKSFGATFLTDTGQESAFAYHIHRYADVYTSKAENFLLYP 580
            ++  A KP F+      R  DT    L        + + I Y G     +  +    G +++Y GDH+F D L+   + GWRT  +I EL  E+ +  D++  FE  Q+    + EL   L ++        + Q  + ++  +      MM  +F             +++ FA  + RYAD+Y +   N L YP
Sbjct:  286 ILVDARKPLFFGEGTVLRQVDTNTGKLKIGTYTGPLQHGIVYSGGSSDIVCDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSNERPDISSIQRRIKKVTHDMDMCYGMMGSLFRSG---------SRQTLFASQVMRYADLYAASFINLLYYP 472
[Close]
BLAST of FC872303 vs. ExPASy Swiss-Prot
Match: 5NTC_BOVIN (Cytosolic purine 5'-nucleotidase OS=Bos taurus GN=NT5C2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11
Identity = 49/196 (25.00%), Postives = 84/196 (42.86%), Query Frame = 2 
Query:    5 VIAQANKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHG-CLKSFLQITKWNGPEVIYFGDHLFSD-LRGPSKAGWRTAAIIHELESEIRIQNDETYRFE--QAKFHIIQELLGKLHATVANSQRTEACQLLLAELNEERQKARRMMKKMFNKSFGATFLTDTGQESAFAYHIHRYADVYTSKAENFLLYP 580
            ++  A KP F+      R  DT+   L        + + I Y G    +   +    G +++Y GDH+F D L+   + GWRT  +I EL  E+ +  D++  FE  Q+    + EL   L ++        + Q  + ++  +      MM  +F             +++ FA  + RYAD+Y +   N L YP
Sbjct:  286 ILVDARKPLFFGEGTVLRQVDTKTGKLKIGTYTGPLQHGIVYSGGSSDTVCDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSNERPDISSIQRRIKKVTHDMDMCYGMMGSLFRSG---------SRQTLFASQVMRYADLYAASFINLLYYP 472
[Close]
BLAST of FC872303 vs. ExPASy Swiss-Prot
Match: 5NTC_CHICK (Cytosolic purine 5'-nucleotidase OS=Gallus gallus GN=NT5C2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.416e-11
Identity = 49/196 (25.00%), Postives = 83/196 (42.35%), Query Frame = 2 
Query:    5 VIAQANKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHG-CLKSFLQITKWNGPEVIYFGDHLFSD-LRGPSKAGWRTAAIIHELESEIRIQNDETYRFE--QAKFHIIQELLGKLHATVANSQRTEACQLLLAELNEERQKARRMMKKMFNKSFGATFLTDTGQESAFAYHIHRYADVYTSKAENFLLYP 580
            ++  A KP F+      R  DT    L        + + I Y G    +   +    G +++Y GDH+F D L+   + GWRT  +I EL  E+ +  D++  FE  Q+    + EL   L ++        + Q  + ++  +      MM  +F             +++ FA  + RYAD+Y +   N L YP
Sbjct:  286 ILVDARKPLFFGEGTVLRQVDTVTGKLKIGTYTGPLQHGIVYSGGSSDTVCDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHVWTDKSALFEELQSLDIFLAELYKHLDSSSNERPDISSIQRRIKKVTHDMDMCYGMMGSLFRSG---------SRQTLFASQVMRYADLYAASFINLLYYP 472
The following BLAST results are available for this feature:
BLAST of FC872303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
5NTC_MOUSE2.549e-1125.00Cytosolic purine 5'-nucleotidase OS=Mus musculus G... [more]
5NTC_HUMAN2.549e-1125.00Cytosolic purine 5'-nucleotidase OS=Homo sapiens G... [more]
5NTC_XENTR3.329e-1125.00Cytosolic purine 5'-nucleotidase OS=Xenopus tropic... [more]
5NTC_BOVIN3.329e-1125.00Cytosolic purine 5'-nucleotidase OS=Bos taurus GN=... [more]
5NTC_CHICK7.416e-1125.00Cytosolic purine 5'-nucleotidase OS=Gallus gallus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DD06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2DD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872303 ID=FC872303; Name=FC872303; organism=Citrus clementina; type=EST; length=895bp
GGGGGTGATTGCGCAAGCAAATAAGCCAGACTTTTACACATCTGACCATC
CTTTCCGCTGCTATGACACAGAGAAGGACACTTTAGCTTTTACAAAGGTG
GATGCGTTTATTCCAAATAAAATCTATTACCATGGATGCCTTAAATCATT
TCTTCAAATTACTAAGTGGAATGGCCCAGAGGTGATATACTTTGGTGATC
ACCTATTTAGTGACCTAAGAGGGCCTTCGAAGGCTGGTTGGCGCACTGCT
GCCATCATCCATGAACTGGAAAGTGAAATACGTATACAAAATGATGAAAC
TTATCGTTTTGAGCAGGCAAAATTTCATATAATACAAGAATTGCTTGGTA
AATTGCATGCGACTGTAGCTAATAGTCAAAGGACTGAAGCATGCCAGTTA
CTTTTGGCTGAGCTTAATGAGGAAAGGCAGAAGGCACGCCGGATGATGAA
GAAAATGTTCAATAAATCATTTGGAGCCACATTCCTGACCGACACTGGTC
AAGAATCTGCTTTTGCATATCATATTCATCGATATGCAGATGTTTATACC
AGTAAGGCAGAGAACTTTTTGCTGTACCCACCAGAAGCATGGCTTCATGT
TCCATTTGATATCAAAATCATGCCACATCATGTGAAGGTCCCCTCAAGCT
TGTTCAGAAATCAATAGTTGGTAGTAGTCCAGCAATTCTTGATTGAGGTG
AAAATTTTTTCATATTTCGCCATTATTAGATTTACTGTTTATTCATCTAT
AGTTCAACAATAAGAAGGGCAACAATAGCACGCTCATGTTCCATGATTAT
GTGGAAACGTGAAGATTGGCTGGGAAGATAACTTGCATAGAAATTGTAAG
TAACACTAATATTCTTTTTGAAACCTCGATTCCTTTTATAGTTAA
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