FC872306

Overview
NameFC872306
Unique NameFC872306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872306 vs. ExPASy Swiss-Prot
Match: SYYC_CHICK (Tyrosyl-tRNA synthetase, cytoplasmic OS=Gallus gallus GN=YARS PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.826e-26
Identity = 64/149 (42.95%), Postives = 91/149 (61.07%), Query Frame = 1
Query:    1 GGMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFN 447
            GG+DQR +   A +Y   +    K I L + M+PGL     KMS S+  S I + D + +V  K+KKA+C P  +E N  L +IK+++FP   +FV+ R E  GGNKT+ +YE L  D+ E  +HPGDLK S+  A+NK+L P+R  FN
Sbjct:  184 GGVDQRKIFTFAEKYLPSLGYA-KRIHLMNPMVPGLTGS--KMSSSEEDSKIDLLDRKEDVKKKLKKAFCEPGNIENNGVLSFIKHVLFPLKSEFVILREEKWGGNKTYTAYETLEKDFAEQVVHPGDLKNSVEAALNKLLDPIREKFN 329          
BLAST of FC872306 vs. ExPASy Swiss-Prot
Match: SYY_SULIY (Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.385e-26
Identity = 65/177 (36.72%), Postives = 99/177 (55.93%), Query Frame = 1
Query:    1 GGMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE----------------KMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRV 483
            GG DQR  ++LAR+  + + +K K + +   +L GLQ GQ                 KMSKS P SAI++ D   +V  KI  AYCP  + E NP L+ +KYIIFP      +ER    GG+  F+ YEEL   Y EG +HP DLK + ++ +N+IL+P+R    +    +++++++
Sbjct:  180 GGTDQRKAHMLARDVAEKMGKK-KIVSIHTPLLVGLQGGQRMSITEGMEEDDIQAEIKMSKSKPESAIFVSDSREDVERKIMGAYCPKGVAENNPILQILKYIIFPRYNFVKIERDIRYGGDVEFKDYEELERAYIEGKIHPMDLKKATARRLNEILEPIRKSLERKPEFEEMIQKI 355          
BLAST of FC872306 vs. ExPASy Swiss-Prot
Match: SYY_SULIN (Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=tyrS PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.385e-26
Identity = 65/177 (36.72%), Postives = 99/177 (55.93%), Query Frame = 1
Query:    1 GGMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE----------------KMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRV 483
            GG DQR  ++LAR+  + + +K K + +   +L GLQ GQ                 KMSKS P SAI++ D   +V  KI  AYCP  + E NP L+ +KYIIFP      +ER    GG+  F+ YEEL   Y EG +HP DLK + ++ +N+IL+P+R    +    +++++++
Sbjct:  180 GGTDQRKAHMLARDVAEKMGKK-KIVSIHTPLLVGLQGGQRMSITEGMEEDDIQAEIKMSKSKPESAIFVSDSREDVERKIMGAYCPKGVAENNPILQILKYIIFPRYNFVKIERDIRYGGDVEFKDYEELERAYIEGKIHPMDLKKATARRLNEILEPIRKSLERKPEFEEMIQKI 355          
BLAST of FC872306 vs. ExPASy Swiss-Prot
Match: SYY_SULIM (Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.385e-26
Identity = 65/177 (36.72%), Postives = 99/177 (55.93%), Query Frame = 1
Query:    1 GGMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE----------------KMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRV 483
            GG DQR  ++LAR+  + + +K K + +   +L GLQ GQ                 KMSKS P SAI++ D   +V  KI  AYCP  + E NP L+ +KYIIFP      +ER    GG+  F+ YEEL   Y EG +HP DLK + ++ +N+IL+P+R    +    +++++++
Sbjct:  180 GGTDQRKAHMLARDVAEKMGKK-KIVSIHTPLLVGLQGGQRMSITEGMEEDDIQAEIKMSKSKPESAIFVSDSREDVERKIMGAYCPKGVAENNPILQILKYIIFPRYNFVKIERDIRYGGDVEFKDYEELERAYIEGKIHPMDLKKATARRLNEILEPIRKSLERKPEFEEMIQKI 355          
BLAST of FC872306 vs. ExPASy Swiss-Prot
Match: SYY_SULIL (Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.385e-26
Identity = 65/177 (36.72%), Postives = 99/177 (55.93%), Query Frame = 1
Query:    1 GGMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE----------------KMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRV 483
            GG DQR  ++LAR+  + + +K K + +   +L GLQ GQ                 KMSKS P SAI++ D   +V  KI  AYCP  + E NP L+ +KYIIFP      +ER    GG+  F+ YEEL   Y EG +HP DLK + ++ +N+IL+P+R    +    +++++++
Sbjct:  180 GGTDQRKAHMLARDVAEKMGKK-KIVSIHTPLLVGLQGGQRMSITEGMEEDDIQAEIKMSKSKPESAIFVSDSREDVERKIMGAYCPKGVAENNPILQILKYIIFPRYNFVKIERDIRYGGDVEFKDYEELERAYIEGKIHPMDLKKATARRLNEILEPIRKSLERKPEFEEMIQKI 355          
BLAST of FC872306 vs. ExPASy Swiss-Prot
Match: SYY_SULIK (Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=tyrS PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.385e-26
Identity = 65/177 (36.72%), Postives = 99/177 (55.93%), Query Frame = 1
Query:    1 GGMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE----------------KMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRV 483
            GG DQR  ++LAR+  + + +K K + +   +L GLQ GQ                 KMSKS P SAI++ D   +V  KI  AYCP  + E NP L+ +KYIIFP      +ER    GG+  F+ YEEL   Y EG +HP DLK + ++ +N+IL+P+R    +    +++++++
Sbjct:  180 GGTDQRKAHMLARDVAEKMGKK-KIVSIHTPLLVGLQGGQRMSITEGMEEDDIQAEIKMSKSKPESAIFVSDSREDVERKIMGAYCPKGVAENNPILQILKYIIFPRYNFVKIERDIRYGGDVEFKDYEELERAYIEGKIHPMDLKKATARRLNEILEPIRKSLERKPEFEEMIQKI 355          
BLAST of FC872306 vs. ExPASy Swiss-Prot
Match: SYY_SULIA (Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (strain M.16.27) GN=tyrS PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.385e-26
Identity = 65/177 (36.72%), Postives = 99/177 (55.93%), Query Frame = 1
Query:    1 GGMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE----------------KMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRV 483
            GG DQR  ++LAR+  + + +K K + +   +L GLQ GQ                 KMSKS P SAI++ D   +V  KI  AYCP  + E NP L+ +KYIIFP      +ER    GG+  F+ YEEL   Y EG +HP DLK + ++ +N+IL+P+R    +    +++++++
Sbjct:  180 GGTDQRKAHMLARDVAEKMGKK-KIVSIHTPLLVGLQGGQRMSITEGMEEDDIQAEIKMSKSKPESAIFVSDSREDVERKIMGAYCPKGVAENNPILQILKYIIFPRYNFVKIERDIRYGGDVEFKDYEELERAYIEGKIHPMDLKKATARRLNEILEPIRKSLERKPEFEEMIQKI 355          
BLAST of FC872306 vs. ExPASy Swiss-Prot
Match: SYY_PYRAB (Tyrosyl-tRNA synthetase OS=Pyrococcus abyssi GN=tyrS PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.115e-26
Identity = 65/186 (34.95%), Postives = 107/186 (57.53%), Query Frame = 1
Query:    4 GMDQRILNVLAREYCDDIK--------RKNKPIILSHHMLPGLQQ----------------GQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDK-KFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRVK 486
            GMDQR  +V+A E    +K         K KP+ + HH+L GLQ+                 Q KMSKS P SA+++ D   E+  K++KA+CP + V  NP L++ ++IIF  +  +F + R    GG+ T+ ++EEL  D+ EG LHP DLK ++++ + ++L+P+R +F ++    +L++ VK
Sbjct:  187 GMDQRKAHVIAIEVAQKLKYHPIVHNGEKLKPVAVHHHLLLGLQEPPVWPITSEEQFKEIKAQMKMSKSKPYSAVFIHDSPEEIKQKLRKAFCPAREVNYNPVLDWAEHIIFREEPTEFTIHRPAKFGGDVTYTTFEELKKDFAEGKLHPLDLKNAVAEYLIELLKPIREYFERHPEPLELMRSVK 372          
BLAST of FC872306 vs. ExPASy Swiss-Prot
Match: SYY_HALMA (Tyrosyl-tRNA synthetase OS=Haloarcula marismortui GN=tyrS PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.313e-26
Identity = 67/149 (44.97%), Postives = 94/149 (63.09%), Query Frame = 1
Query:    1 GGMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPW----DKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVR 435
            GG+DQR + +L+RE   D   ++ PI L   +L GL  G  KMS SD +S + + D   EV+ KI +AYCP   VE N  LEY+++++FP        FVVER E  GG+ T+ESY+E+ +D+  G LHP DLKPS + AI+ ++ PVR
Sbjct:  180 GGVDQRGIYMLSREILPDHGGES-PICLFAPLLSGLSGG--KMSASDEASKVNLTDSPDEVDEKINQAYCPAGEVEENGVLEYLQHLVFPVLDVRGDSFVVERPEEYGGDLTYESYDEVESDFVSGELHPADLKPSAASAISDVIDPVR 325          
BLAST of FC872306 vs. ExPASy Swiss-Prot
Match: SYY_PYRIL (Tyrosyl-tRNA synthetase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tyrS PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.939e-26
Identity = 71/188 (37.77%), Postives = 103/188 (54.79%), Query Frame = 1
Query:    1 GGMDQRILNVLAREYCDDIK--------RKNKPIILSHHMLPGL----------QQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKK--FVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRVKGYRVTR 504
            GG+DQR  ++LAR+  D I+        ++ KP+ L H +LP L          +  + KMSKS P SAI++ D   E+  KI KAYCPP+  E NP LE ++   F   +K   V++R    GG+    SYEEL A Y +G +HP DLK + S+A+  +L+PV  +F        LL+ +K   +TR
Sbjct:  187 GGIDQRRAHILARQVADKIRFYPLKVDGKRIKPVALHHKLLPALNITSKPSSREELSEMKMSKSIPQSAIFVHDSPDEIRQKIAKAYCPPRDTEYNPVLELLRISAFREKRKTPLVIKRPAQYGGDLEVWSYEELEALYRDGRVHPADLKTATSEALITLLEPVYRYF--QGPGAKLLEEMKNITITR 372          
The following BLAST results are available for this feature:
BLAST of FC872306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
SYYC_CHICK1.826e-2642.95Tyrosyl-tRNA synthetase, cytoplasmic OS=Gallus gal... [more]
SYY_SULIY2.385e-2636.72Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (... [more]
SYY_SULIN2.385e-2636.72Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (... [more]
SYY_SULIM2.385e-2636.72Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (... [more]
SYY_SULIL2.385e-2636.72Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (... [more]
SYY_SULIK2.385e-2636.72Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (... [more]
SYY_SULIA2.385e-2636.72Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (... [more]
SYY_PYRAB3.115e-2634.95Tyrosyl-tRNA synthetase OS=Pyrococcus abyssi GN=ty... [more]
SYY_HALMA5.313e-2644.97Tyrosyl-tRNA synthetase OS=Haloarcula marismortui ... [more]
SYY_PYRIL6.939e-2637.77Tyrosyl-tRNA synthetase OS=Pyrobaculum islandicum ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DD12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2DD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872306 ID=FC872306; Name=FC872306; organism=Citrus clementina; type=EST; length=692bp
GGGGGCATGGATCAGCGGATTTTAAATGTACTTGCAAGAGAGTACTGTGA
TGACATCAAGAGGAAAAACAAGCCCATCATTTTGTCGCATCATATGCTTC
CTGGACTTCAGCAAGGACAAGAAAAGATGTCAAAGAGTGATCCATCATCT
GCCATCTACATGGAGGATGAGGAGGCTGAAGTCAATGTGAAAATAAAGAA
AGCATACTGCCCTCCAAAGATTGTTGAAGGAAATCCATGTCTGGAGTACA
TAAAATACATCATCTTTCCATGGGACAAAAAATTTGTGGTGGAGCGTAGC
GAAGCCAATGGTGGCAACAAGACCTTCGAAAGCTATGAAGAACTTGTTGC
TGATTATGAAGAAGGAAATTTACATCCTGGGGATCTGAAACCTTCTCTGT
CTAAAGCAATAAATAAGATACTGCAGCCTGTGCGTAATCATTTCAACAAG
AATGCTAATGCCCAGGATCTGCTGAAACGTGTTAAGGGTTACAGAGTTAC
CAGGTGAGATGTGCAAGGGATGTCTGCTTGTTGCCTTTGGTGTCTTTGCT
AACAGAGAAGAAACTTCCTTTTGATTAAAGTTAAATATGACGTTCGGTTA
CGATCATGAATACTAGTAGAAATTAACAAAAATTAGTTGTTGAAATTATA
ATTTATACTATTCTCAGCTTGGGGATTGTTTAAAAAAAAAAA
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