FC872379

Overview
NameFC872379
Unique NameFC872379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length910
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC872379 vs. ExPASy Swiss-Prot
Match: MIAA_BACHD (tRNA Delta(2)-isopentenylpyrophosphate transferase OS=Bacillus halodurans GN=miaA PE=1 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 9.172e-12
Identity = 36/109 (33.03%), Postives = 49/109 (44.95%), Query Frame = 3 
Query:    6 DSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLNDSAEDMDE----SCFGSLSGDEPVGPXXXXXXXXXXXXXXXXXXXXPVAANRIHPNNYRKINQYLSLYARTG 320
            D A PLI+EI  R  +PF+VGGT  Y+ A++  F L D   D D       F +  G + +                      P AA  IHPNNYR++ + L +   TG
Sbjct:   79 DLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNSYGVQAL--------------HDKLSKIDPKAAAAIHPNNYRRVIRALEIIKLTG 173

HSP 2 Score: 36.1946 bits (82), Expect = 9.172e-12
Identity = 23/67 (34.33%), Postives = 35/67 (52.24%), Query Frame = 2 
Query:  392 FNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNANADYTRGLR-----QAIGVREFEDFL 577
            +N   I +     VL   + +RVD M++ GL+DE   +Y+      RG+R     QAIG +E  D+L
Sbjct:  190 YNLVMIGLTMERDVLYDRINRRVDQMVEEGLIDEAKKLYD------RGIRDCQSVQAIGYKEMYDYL 250
The following BLAST results are available for this feature:
BLAST of FC872379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
MIAA_BACHD9.172e-1233.03tRNA Delta(2)-isopentenylpyrophosphate transferase... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BB02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872379 ID=FC872379; Name=FC872379; organism=Citrus clementina; type=EST; length=910bp
GGGGAGATTCTGCTGTTCCTCTTATCAGTGAGATATTATCACGTGATCAC
ATACCATTCATTGTTGGGGGTACAAACTACTATATTCAGGCTCTTGTGAG
TCCATTTCTTCTAAATGATTCAGCAGAAGATATGGATGAAAGCTGCTTTG
GCAGCCTTTCTGGGGATGAGCCGGTTGGTCCTGACTCTGACTTAGCAAGA
GACAGTTCTAGCTATAGTTATGACCTCCTCAAAGACCTTGACCCAGTTGC
AGCAAACAGAATTCATCCAAATAACTATAGAAAAATCAACCAATACCTTA
GCTTGTATGCACGCACTGGAGTTCTCCCTAGCAAACTTTATCAAGGAAAA
GCCGCTGAGGGCAGAACTGGGGCCGAGTAGACAATTTTAGATTCAATTGC
TGCTTTATATGTGTTGACGCCGCAAATCCTGTGCTGGACCGATATGTGGA
ACAAAGAGTTGACTGCATGATAGATGCTGGATTGCTTGATGAGGTGTATG
ACATTTACAATGCGAATGCTGATTATACCAGAGGTCTGCGGCAGGCCATA
GGTGTTCGGGAGTTTGAGGATTTTCTGAGCGTTTACCATTCTGTGGACAG
AGATAACAAGACAAGTGGACCTACTAATGCAACTCTGAATTCTAGAAACA
AGGATGACAAGACATTGAAAGACTGTATGAGAGCAATACTTAAGTCATCC
GCTGATGATCAACTAAAAGTACTTTTAGAAGAGGCCATTGATCGAGTAAA
ATTAAACACCAGAAGACTTGTTCGATGTCAAAAGAGGAGGCTCAATCATC
TTCAAACTTTGTTTGGATGGGACATTCATTATGTTGATTCAACAGAATCC
ATTTCATGCAAATCAGATGAAGTGTGGACTGCACAAGTGGTTGGACCTGC
TGTGAAAATT
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