FC872520

Overview
NameFC872520
Unique NameFC872520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length847
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_PEA (Translationally-controlled tumor protein homolog OS=Pisum sativum GN=TCTP PE=2 SV=2)

HSP 1 Score: 251.906 bits (642), Expect = 3.303e-66
Identity = 125/168 (74.40%), Postives = 139/168 (82.74%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            MLVYQDLLTGDELLSDS+PYKEIENG+LWEVEGKWVV+GA DV+IGANPS               KVVDIVD FRLQEQP FDKK F+ ++K++IKLLTPKL  E+QE FKKNIEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GA DPTFLY + ALKE+KC
Sbjct:    1 MLVYQDLLTGDELLSDSYPYKEIENGMLWEVEGKWVVKGAVDVNIGANPSAEGGEDEGVDDTAV-KVVDIVDVFRLQEQPPFDKKQFLGFVKKYIKLLTPKLEAEKQEHFKKNIEGATKYLLGKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFSFALKEIKC 167          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_MEDSA (Translationally-controlled tumor protein homolog OS=Medicago sativa GN=TCTP PE=2 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 1.255e-65
Identity = 124/168 (73.81%), Postives = 138/168 (82.14%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            MLVYQDLLTGDELLSDS+PYKEIENG+LWEVEGKWV +G  +VDIGAN S               KVVDIVD FRLQEQPAFDKK F+ ++KR+IKLLTPKL  E+QE+FKK+IEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GA DPTFLY A ALKE+KC
Sbjct:    1 MLVYQDLLTGDELLSDSYPYKEIENGMLWEVEGKWVTKGVVEVDIGANASAEGGEDEGVDDTAV-KVVDIVDVFRLQEQPAFDKKQFLGFVKRYIKLLTPKLDAEKQELFKKHIEGATKYLLCKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFAYALKEIKC 167          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_HORVU (Translationally-controlled tumor protein homolog OS=Hordeum vulgare GN=TCTP PE=2 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 2.796e-65
Identity = 121/168 (72.02%), Postives = 134/168 (79.76%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            MLVYQD L+GDELLSDSFPY+E+ENG+LWEV+G WVVQGA DVDIGANPS               KVVDIVDTFRLQEQPAFDKK F+ Y+KR+IK LT KL  E  + FKKN+E ATK+LLSKL DLQFFVGESMHDDG +VFAYY+EGA DPTFLY A  LKEVKC
Sbjct:    1 MLVYQDKLSGDELLSDSFPYRELENGVLWEVDGHWVVQGAVDVDIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKNVESATKYLLSKLKDLQFFVGESMHDDGSVVFAYYREGAADPTFLYFAHGLKEVKC 168          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_BRAOL (Translationally-controlled tumor protein homolog OS=Brassica oleracea GN=TCTP PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.769e-65
Identity = 121/168 (72.02%), Postives = 133/168 (79.17%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            MLVY DLLTGDELLSDSFPYKEIENGILWEVEGKW  +G  +V+IGANPS               KVVDIVDTFRLQEQP +DKK F+ Y+K++IKLLTPKL+ E+QE FKK IEGATKFLL KL D QFFVGE MHDD  +VFAYYKEGAT+PTFLY A  LKEVKC
Sbjct:    1 MLVYTDLLTGDELLSDSFPYKEIENGILWEVEGKWTTKGCVEVNIGANPSAEEGGEDEGVDDSVEKVVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLTPEQQEEFKKGIEGATKFLLPKLKDFQFFVGEGMHDDSTIVFAYYKEGATNPTFLYFAHGLKEVKC 168          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_WHEAT (Translationally-controlled tumor protein homolog OS=Triticum aestivum GN=TCTP PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 8.135e-65
Identity = 120/168 (71.43%), Postives = 136/168 (80.95%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            MLVYQD L+GDELLSDSFPY+E+ENG+LWEV+G WVVQGA DVDIGANPS               KVVDIVDTFRLQEQPAFDKK F+++MKR+IK L+ KL  +  ++FKKN+E ATK+LLSKL DLQFFVGESMHDDG +VFAYYKEGA DPTFLY A  LKEVKC
Sbjct:    1 MLVYQDKLSGDELLSDSFPYRELENGVLWEVDGHWVVQGAVDVDIGANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFISHMKRYIKNLSAKLEGDDLDVFKKNVESATKYLLSKLKDLQFFVGESMHDDGGVVFAYYKEGAADPTFLYFAHGLKEVKC 168          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_TOBAC (Translationally-controlled tumor protein homolog OS=Nicotiana tabacum GN=TCTP PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.812e-64
Identity = 121/168 (72.02%), Postives = 137/168 (81.55%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            MLVYQDLL+GDEL SDSF Y E+ NG+LWEV+GKWVVQGA DV+IGANPS               KVVDIVDTFRLQEQP+FDKK FV YMK++IK LTPKL  E++E+FK NI+GATK+LLSKLSDLQFFVGESM DD  +VFAYYK+GATDPTFLY+A  LKEVKC
Sbjct:    1 MLVYQDLLSGDELPSDSFSYTELGNGVLWEVQGKWVVQGAVDVNIGANPSAEGADEDEGVDDQAIKVVDIVDTFRLQEQPSFDKKQFVAYMKKYIKNLTPKLGAEQEEVFKNNIQGATKYLLSKLSDLQFFVGESMADDTGMVFAYYKDGATDPTFLYLAHGLKEVKC 168          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_CUCME (Translationally-controlled tumor protein homolog OS=Cucumis melo GN=TCTP PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.299e-62
Identity = 118/168 (70.24%), Postives = 134/168 (79.76%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            MLVYQDL++GDELLSDSFPYKEIENG++WEVEGKWVV+GA DVDIGANPS               KVVDIVDTFRLQEQP+ DKK F++ +K++IK LTP L  E+QE FK  IEGA K+LL K+ DLQFFVGESM DD  +VFAYYKEGATDPTFLY+A  LKEVKC
Sbjct:    1 MLVYQDLVSGDELLSDSFPYKEIENGMIWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPSMDKKVFLSCIKKYIKKLTPLLQGEQQEAFKNKIEGAVKYLLPKVKDLQFFVGESMADDSAMVFAYYKEGATDPTFLYIAPGLKEVKC 168          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_MAIZE (Translationally-controlled tumor protein homolog OS=Zea mays GN=TCTP PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.344e-59
Identity = 115/168 (68.45%), Postives = 130/168 (77.38%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            MLVYQDLL+GDELLSDSF YKE+ENG+LWEVEGKWV QG  DVDIGANPS               KVVDIVDTFRLQEQP FDKK FV+Y+K++IK LT  L  E+ + FKK +EGATKFLLSKL DLQFFVGESM DD  + FAYYK+GAT+ TFLY +  LKE+KC
Sbjct:    1 MLVYQDLLSGDELLSDSFTYKELENGVLWEVEGKWVTQGPVDVDIGANPSAEGGEDESVDDTAV-KVVDIVDTFRLQEQPPFDKKSFVSYIKKYIKNLTAVLEPEKADEFKKGVEGATKFLLSKLKDLQFFVGESMKDDASVAFAYYKDGATNSTFLYFSHGLKEIKC 167          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_CRYNE (Translationally-controlled tumor protein homolog OS=Cryptococcus neoformans GN=CNM01460 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25
Identity = 66/170 (38.82%), Postives = 100/170 (58.82%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVK 612
            ML+YQD+LTGDE++SD+FP KEI + I +EV+   ++    DVDIG NPS               +V ++V +FRLQ   +FDKK ++TY+K ++K +  KL E   +R   F+K  +   K +++   D +F++GESM+ DG +    Y+E    P F    D LKE+K
Sbjct:    1 MLIYQDVLTGDEMISDAFPIKEIGD-IAYEVDCANIIIKEGDVDIGGNPSAEEAAEALEEGAQ--QVNNVVHSFRLQST-SFDKKSYLTYLKGYMKAIKSKLQESNPDRVAAFEKGAQDFAKKIVANFKDYEFYIGESMNPDGMVCLLNYREDGVTPYFTMWKDGLKEIK 166          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_GIBZE (Translationally-controlled tumor protein homolog OS=Gibberella zeae GN=FG02523 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.898e-23
Identity = 66/173 (38.15%), Postives = 97/173 (56.07%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQ--EIFKKNIEGATKF----LLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVK 612
            ML+Y D+L GDEL+SDS+  KE++ GI++E +   + +GA +V+IGAN S               KV +IV++FRLQ    FDKK ++ Y+K ++K +  KL E     E  K    GA+KF    ++ K  D +F+ GESM  DG +V   Y+E    P  ++    LKE K
Sbjct:    1 MLIYNDILNGDELISDSYDLKEVD-GIVYEADCAMIEEGAVEVNIGANASAEEAAEDLDDGAV--KVNNIVNSFRLQST-TFDKKSYLAYLKGYMKAIKAKLQENGSSAEDIKAFETGASKFVKDTIVPKFKDFEFYTGESMDPDGMVVLLNYREDGVTPYTIFWKHGLKETK 169          
The following BLAST results are available for this feature:
BLAST of FC872520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
TCTP_PEA3.303e-6674.40Translationally-controlled tumor protein homolog O... [more]
TCTP_MEDSA1.255e-6573.81Translationally-controlled tumor protein homolog O... [more]
TCTP_HORVU2.796e-6572.02Translationally-controlled tumor protein homolog O... [more]
TCTP_BRAOL4.769e-6572.02Translationally-controlled tumor protein homolog O... [more]
TCTP_WHEAT8.135e-6571.43Translationally-controlled tumor protein homolog O... [more]
TCTP_TOBAC1.812e-6472.02Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCME1.299e-6270.24Translationally-controlled tumor protein homolog O... [more]
TCTP_MAIZE1.344e-5968.45Translationally-controlled tumor protein homolog O... [more]
TCTP_CRYNE1.658e-2538.82Translationally-controlled tumor protein homolog O... [more]
TCTP_GIBZE5.898e-2338.15Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AH07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872520 ID=FC872520; Name=FC872520; organism=Citrus clementina; type=EST; length=847bp
GGGGCCCTCTCGCTCTCGCTCTCTCACCGCTGCGTCTCTCTCTCTCTCTC
TCTCTCCAGTTTTCTCCGTTGATTGTTTTTCTTTTTTGTGTTCGCGAGAG
AGACTGCAATCATGTTGGTCTATCAAGATCTCCTCACCGGTGATGAGCTT
CTCTCCGACTCTTTTCCCTACAAGGAAATTGAGAATGGGATTCTGTGGGA
AGTTGAGGGAAAGTGGGTTGTACAAGGAGCCGCTGATGTTGACATTGGTG
CAAATCCTTCTGCCGAAGGAGCTGATGAGGATGAGGGTGTTGATGACCAA
GCCGTGAAGGTGGTCGACATTGTCGACACATTCAGGCTACAGGAGCAACC
CGCTTTTGACAAGAAGCCGTTTGTAACATACATGAAGAGATTCATCAAGT
TGCTGACGCCCAAGCTGAGTGAGGAGAGGCAGGAGATATTTAAGAAGAAT
ATTGAGGGAGCGACCAAGTTCTTGCTCTCGAAGCTCAGTGACCTTCAATT
CTTTGTTGGGGAGAGCATGCATGATGATGGCTGTCTTGTCTTTGCTTACT
ACAAGGAAGGTGCGACCGACCCAACATTTTTGTATATGGCTGATGCATTG
AAGGAGGTGAAGTGCTAAGCTGGGCTTCGAAGAGGAAGTGCCTGCTGTAG
TTCTAATTTTAATTATTGCCCGCGGTTATTTTTATGTATCTTTTGTGCTG
GTTTACTCGGGACTTGTGCTTGCTGTTTTTTAGTTTTTATTTTGTCATAA
ACAATATGTTTTTCTGCTCTTAATTATTGGGTTTTATGGTTTGAGATTGA
ATTACCAAATAACTTAATAGTTTTTGCAAAAAAAAAAAAAAAAAAAA
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