FC872520

Overview
NameFC872520
Unique NameFC872520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length847
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_ASPOR (Translationally-controlled tumor protein homolog OS=Aspergillus oryzae GN=AO090005000996 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 60/173 (34.68%), Postives = 90/173 (52.02%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDI-GANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFD----KKPFVTYMKRFI-KLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVK 612
            M++Y+D+LTGDE++SD+F  KE++N ILWEV+ + +  G  ++ + GANPS               +V+DI   FRL + P  +    KK    YMK+ + KL   K  EE  + FK+N + A K +L+   D    VGES   D   +   Y+E    P   +    L+E K
Sbjct:    1 MIIYKDILTGDEIISDAFNLKEVDN-ILWEVDCRNITIGDENIQLEGANPSAEGEDDDAGGAGNAEQVLDIKHNFRLNDYPKLEKDEYKKAIKGYMKKVLAKLEEKKAPEETIKEFKENAQTALKRILANYKDYDVLVGESFGADAMHILINYREDGVTPYATFWKHGLEEYK 172          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_RAT (Translationally-controlled tumor protein OS=Rattus norvegicus GN=Tpt1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 60/174 (34.48%), Postives = 92/174 (52.87%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVD---IGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            M++Y+DL++ DEL SD +  +EI +G+  EVEGK V +    +D   IG N S                V DIV    LQE  +F K+ +  Y+K ++K L  KL E++ E  K  + GA    K +L+  ++ QFF+GE+M+ DG +    Y+E    P  ++  D L+  KC
Sbjct:    1 MIIYRDLISHDELFSDIYKIREIADGLCLEVEGKMVSRTEGAIDDSLIGGNASAEGPEGEGTESTVVTGV-DIVMNHHLQET-SFTKEAYKKYIKDYMKSLKGKLEEQKPERVKPFMTGAAEQIKHILANFNNYQFFIGENMNPDGMVALLDYREDGVTPFMIFFKDGLEMEKC 172          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_MOUSE (Translationally-controlled tumor protein OS=Mus musculus GN=Tpt1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 60/174 (34.48%), Postives = 92/174 (52.87%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVD---IGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            M++Y+DL++ DEL SD +  +EI +G+  EVEGK V +    +D   IG N S                V DIV    LQE  +F K+ +  Y+K ++K L  KL E++ E  K  + GA    K +L+  ++ QFF+GE+M+ DG +    Y+E    P  ++  D L+  KC
Sbjct:    1 MIIYRDLISHDELFSDIYKIREIADGLCLEVEGKMVSRTEGAIDDSLIGGNASAEGPEGEGTESTVVTGV-DIVMNHHLQET-SFTKEAYKKYIKDYMKSLKGKLEEQKPERVKPFMTGAAEQIKHILANFNNYQFFIGENMNPDGMVALLDYREDGVTPFMIFFKDGLEMEKC 172          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_DROME (Translationally-controlled tumor protein homolog OS=Drosophila melanogaster GN=Tctp PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 60/175 (34.29%), Postives = 97/175 (55.43%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDI-GANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAF-DKKPFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKE--GATDPTFLYMADALKEVKC 615
            M +Y+D++TGDE+ +D++  K +++ +++EV GK + +   D+ + GAN S                 VD+V   RL E  AF DKK +  Y+K ++K +  KL E   ++ +IFK N+  A K +L +  +LQFF GESM  DG +    Y+E  G + P  ++    L+E KC
Sbjct:    1 MKIYKDIITGDEMFADTYKMKLVDD-VIYEVYGKLITRQGDDIKLEGANASAEEADEGTDITSESG--VDVVLNHRLTECFAFGDKKSYTLYLKDYMKKVLAKLEEKSPDQVDIFKTNMNKAMKDILGRFKELQFFTGESMDCDGMVALVEYREINGDSVPVLMFFKHGLEEEKC 172          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_BOVIN (Translationally-controlled tumor protein OS=Bos taurus GN=TPT1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 58/174 (33.33%), Postives = 92/174 (52.87%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVD---IGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            M++Y+DL++ DE+ SD +  +E+ +G+  EVEGK V +   ++D   IG N S                V DIV    LQE  +F K+ +  Y+K ++K +  KL E+R E  K  + GA    K +L+   + QFF+GE+M+ DG +    Y+E    P  ++  D L+  KC
Sbjct:    1 MIIYRDLISHDEMFSDIYKIREVADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGV-DIVMNHHLQET-SFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC 172          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_BOMMO (Translationally-controlled tumor protein homolog OS=Bombyx mori GN=Tctp PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 61/174 (35.06%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDI-GANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAF-DKKPFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYK--EGATDPTFLYMADALKEVK 612
            M +Y+D++TGDE+ SD++  K ++  +++EV G+ V +   D+ I G NPS                 VDIV   RL E  AF DKK +  Y+K ++K L  KL E   ++ E+FK N+    K +L +  +LQFF GESM  DG +    Y+  +G   P  ++    L+E K
Sbjct:    1 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESG--VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 171          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_RABIT (Translationally-controlled tumor protein OS=Oryctolagus cuniculus GN=TPT1 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.151e-18
Identity = 58/174 (33.33%), Postives = 91/174 (52.30%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVD---IGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            M++Y+DL++ DE+ SD +  +EI  G+  EVEGK V +   ++D   IG N S                V DIV    LQE  +F K+ +  Y+K ++K +  KL E+R E  K  + GA    K +L+   + QF++GE+M+ DG +    Y+E    P  ++  D L+  KC
Sbjct:    1 MIIYRDLISHDEMFSDIYKIREIAGGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGV-DIVMNHHLQET-SFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFYIGENMNPDGMVALLDYREDGVTPFMIFFKDGLEMEKC 172          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_DEBHA (Translationally-controlled tumor protein homolog OS=Debaryomyces hansenii GN=DEHA2E17468g PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.151e-18
Identity = 57/157 (36.31%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKF---LLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDP 573
            M+++ D+++GDELLSD++  K +++ +++E +   V     DVDIGANPS                V ++V +FRLQ Q +FDKK F+TYMK ++K +   L+E+  E  +    GA  +   ++S   D  F+ GESM  DG +V   Y+E  T P
Sbjct:    1 MIIFTDVISGDELLSDAYDVKLVDD-VVYEADCAMVNVNNGDVDIGANPSAEEGGEDLEDGTET--VNNVVYSFRLQ-QTSFDKKSFMTYMKGYMKRVKAHLAEKNPEAIEAFENGAKTYFKKVVSSFGDWDFYTGESMDPDGMVVLLNYREDGTTP 153          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_DROPS (Translationally-controlled tumor protein homolog OS=Drosophila pseudoobscura pseudoobscura GN=Tctp PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.374e-18
Identity = 57/175 (32.57%), Postives = 99/175 (56.57%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDI-GANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAF-DKKPFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKE--GATDPTFLYMADALKEVKC 615
            M +++D++TGDE+ +D++  K +++ +++EV GK + +  +++ + GAN S                 VD+V   RL E  AF DKK +  Y+K ++K +  KL+E   ++ ++FK N+  A K +L +  +LQFF GESM  DG +    Y+E  G + P  ++    L+E KC
Sbjct:    1 MKIFKDIITGDEMFADTYKIKLVDD-VVYEVYGKLISREGSEIKLEGANASAEEADEGTDTNVESG--VDVVLNHRLVECFAFGDKKSYTLYLKDYMKKVLAKLAEKSPDQVDVFKTNMNKAMKDILGRFKELQFFTGESMDCDGMVALVEYREIDGQSIPVLMFFKHGLEEEKC 172          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_CHICK (Translationally-controlled tumor protein homolog OS=Gallus gallus GN=TPT1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.713e-18
Identity = 56/174 (32.18%), Postives = 89/174 (51.15%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVD---IGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            M++Y+D ++ DE+ SD +  +E+ NG+  EVEGK V +    +D   IG N S                V DIV    LQE  +F K+ +  Y+K ++K +  +L E + E  K  + GA    K +L+   + QFFVGE+M+ DG +    ++E    P  ++  D L+  KC
Sbjct:    1 MIIYRDCISQDEMFSDIYKIREVANGLCLEVEGKMVTRTEGQIDDSLIGGNASAEGPEGEGTEATVITGV-DIVINHHLQET-SFTKESYKKYIKDYMKAIKARLEEHKPERVKPFMTGAAEQIKHILANFKNYQFFVGENMNPDGMVALLDFREDGVTPYMIFFKDGLEIEKC 172          
The following BLAST results are available for this feature:
BLAST of FC872520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
TCTP_ASPOR3.956e-1934.68Translationally-controlled tumor protein homolog O... [more]
TCTP_RAT5.167e-1934.48Translationally-controlled tumor protein OS=Rattus... [more]
TCTP_MOUSE5.167e-1934.48Translationally-controlled tumor protein OS=Mus mu... [more]
TCTP_DROME5.167e-1934.29Translationally-controlled tumor protein homolog O... [more]
TCTP_BOVIN5.167e-1933.33Translationally-controlled tumor protein OS=Bos ta... [more]
TCTP_BOMMO5.167e-1935.06Translationally-controlled tumor protein homolog O... [more]
TCTP_RABIT1.151e-1833.33Translationally-controlled tumor protein OS=Orycto... [more]
TCTP_DEBHA1.151e-1836.31Translationally-controlled tumor protein homolog O... [more]
TCTP_DROPS4.374e-1832.57Translationally-controlled tumor protein homolog O... [more]
TCTP_CHICK5.713e-1832.18Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AH07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872520 ID=FC872520; Name=FC872520; organism=Citrus clementina; type=EST; length=847bp
GGGGCCCTCTCGCTCTCGCTCTCTCACCGCTGCGTCTCTCTCTCTCTCTC
TCTCTCCAGTTTTCTCCGTTGATTGTTTTTCTTTTTTGTGTTCGCGAGAG
AGACTGCAATCATGTTGGTCTATCAAGATCTCCTCACCGGTGATGAGCTT
CTCTCCGACTCTTTTCCCTACAAGGAAATTGAGAATGGGATTCTGTGGGA
AGTTGAGGGAAAGTGGGTTGTACAAGGAGCCGCTGATGTTGACATTGGTG
CAAATCCTTCTGCCGAAGGAGCTGATGAGGATGAGGGTGTTGATGACCAA
GCCGTGAAGGTGGTCGACATTGTCGACACATTCAGGCTACAGGAGCAACC
CGCTTTTGACAAGAAGCCGTTTGTAACATACATGAAGAGATTCATCAAGT
TGCTGACGCCCAAGCTGAGTGAGGAGAGGCAGGAGATATTTAAGAAGAAT
ATTGAGGGAGCGACCAAGTTCTTGCTCTCGAAGCTCAGTGACCTTCAATT
CTTTGTTGGGGAGAGCATGCATGATGATGGCTGTCTTGTCTTTGCTTACT
ACAAGGAAGGTGCGACCGACCCAACATTTTTGTATATGGCTGATGCATTG
AAGGAGGTGAAGTGCTAAGCTGGGCTTCGAAGAGGAAGTGCCTGCTGTAG
TTCTAATTTTAATTATTGCCCGCGGTTATTTTTATGTATCTTTTGTGCTG
GTTTACTCGGGACTTGTGCTTGCTGTTTTTTAGTTTTTATTTTGTCATAA
ACAATATGTTTTTCTGCTCTTAATTATTGGGTTTTATGGTTTGAGATTGA
ATTACCAAATAACTTAATAGTTTTTGCAAAAAAAAAAAAAAAAAAAA
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