FC872520

Overview
NameFC872520
Unique NameFC872520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length847
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_BRABE (Translationally-controlled tumor protein homolog OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.363e-11
Identity = 51/172 (29.65%), Postives = 82/172 (47.67%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQ--GAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVK 612
            M++Y+D+++GDE+ SD++  K +++   +E+EGK   +  G  +  IG N S                  +IV   RLQE   F K  +  Y+K + K +   L++   ER + FK       K ++    + QFF GE M  DG +    Y+E    P  L+  D L+E K
Sbjct:    1 MIIYKDIVSGDEMFSDAYKMKVLDD-YFYELEGKITTEKGGIDESAIGGNASAEDAVEGLEESGTTG--CNIVIAQRLQETQ-FTKAQYKVYIKDYSKKVLEYLTKNKPERVDGFKAASAAGMKRVMGNFKNWQFFTGEKMDQDGMVALMDYREDGKTPYMLFFKDGLEEEK 168          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_LUMRU (Translationally-controlled tumor protein homolog OS=Lumbricus rubellus GN=TCTP PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.036e-11
Identity = 56/172 (32.56%), Postives = 83/172 (48.26%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAA--DVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEER---QEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVK 612
            M++++D+  G EL SDSFP   + N  +++V+GK      A  D  IG N S                 VDIV   RL E  A  KK ++T++K ++K +  KL E +    E+F+KN++   K +L+   + Q F GESM  +G L  A  K     P   +    L E K
Sbjct:    1 MIIFKDVFPGVELFSDSFPVSLV-NETVYKVKGKLRTDTFAIDDKAIGGNASAEGGEEGTDAASKQG--VDIVMNSRLVEY-ALSKKDYMTHIKSYMKSVKDKLQETKPADSELFQKNVQPFIKEVLNDFKEYQLFCGESMGPEGML--ALMKWDGETPYMFFFKHGLDEEK 166          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_EMENI (Translationally-controlled tumor protein homolog OS=Emericella nidulans GN=AN0641 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.179e-11
Identity = 53/179 (29.61%), Postives = 83/179 (46.37%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVE-GKWVVQGAADVDI-GANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFD---------KKPFVTYMKRFIKLLTPK-LSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVK 612
            M++Y+D+++GDE+LSD++  K ++ G+L+E +  K++ +   D ++ GANPS                V DI D FRL    A D         K    TYMK+ +K L  K   +E    FKK    A   +L    +    +GESM  D   +   ++E    P        L+E+K
Sbjct:    1 MIIYKDIISGDEVLSDTYNIKTVD-GVLYECDCRKYLKKTNEDFELEGANPSAEGGDDEGGAEGGEVMVHDIEDQFRLVWLKAEDGAKPPKDAFKGHLKTYMKKVLKALQDKGAPDETINEFKKGAPAAVNKILKNYDNYDVLMGESMDGDAMHILIDFREDGVTPYATLWKHGLEEMK 178          
The following BLAST results are available for this feature:
BLAST of FC872520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
TCTP_BRABE1.363e-1129.65Translationally-controlled tumor protein homolog O... [more]
TCTP_LUMRU3.036e-1132.56Translationally-controlled tumor protein homolog O... [more]
TCTP_EMENI5.179e-1129.61Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AH07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872520 ID=FC872520; Name=FC872520; organism=Citrus clementina; type=EST; length=847bp
GGGGCCCTCTCGCTCTCGCTCTCTCACCGCTGCGTCTCTCTCTCTCTCTC
TCTCTCCAGTTTTCTCCGTTGATTGTTTTTCTTTTTTGTGTTCGCGAGAG
AGACTGCAATCATGTTGGTCTATCAAGATCTCCTCACCGGTGATGAGCTT
CTCTCCGACTCTTTTCCCTACAAGGAAATTGAGAATGGGATTCTGTGGGA
AGTTGAGGGAAAGTGGGTTGTACAAGGAGCCGCTGATGTTGACATTGGTG
CAAATCCTTCTGCCGAAGGAGCTGATGAGGATGAGGGTGTTGATGACCAA
GCCGTGAAGGTGGTCGACATTGTCGACACATTCAGGCTACAGGAGCAACC
CGCTTTTGACAAGAAGCCGTTTGTAACATACATGAAGAGATTCATCAAGT
TGCTGACGCCCAAGCTGAGTGAGGAGAGGCAGGAGATATTTAAGAAGAAT
ATTGAGGGAGCGACCAAGTTCTTGCTCTCGAAGCTCAGTGACCTTCAATT
CTTTGTTGGGGAGAGCATGCATGATGATGGCTGTCTTGTCTTTGCTTACT
ACAAGGAAGGTGCGACCGACCCAACATTTTTGTATATGGCTGATGCATTG
AAGGAGGTGAAGTGCTAAGCTGGGCTTCGAAGAGGAAGTGCCTGCTGTAG
TTCTAATTTTAATTATTGCCCGCGGTTATTTTTATGTATCTTTTGTGCTG
GTTTACTCGGGACTTGTGCTTGCTGTTTTTTAGTTTTTATTTTGTCATAA
ACAATATGTTTTTCTGCTCTTAATTATTGGGTTTTATGGTTTGAGATTGA
ATTACCAAATAACTTAATAGTTTTTGCAAAAAAAAAAAAAAAAAAAA
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