FC872523 | Citrus Genome Database

Overview


Name	FC872523
Unique Name	FC872523
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	511

Libraries


Library Name	Type
AbsCOv1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: CAD8A_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza sativa subsp. japonica GN=CAD8A PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.390e-17
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 3

Query:  204 ETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 353
            E Q M+DFA +H I AD+EV+    VN A+ RL + DVRYRFVIDVA T+
Sbjct:  303 ECQAMLDFAGEHGIAADVEVVAMGDVNAALGRLERNDVRYRFVIDVAGTL 352

HSP 2 Score: 34.2686 bits (77), Expect = 4.390e-17
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 1

Query:   25 DGIIDTVSAVHPLMPLFGLVE 87
            DGIIDTVSA HPL+PL  L++
Sbjct:  244 DGIIDTVSAGHPLVPLLSLLK 264

HSP 3 Score: 31.5722 bits (70), Expect = 4.390e-17
Identity = 13/29 (44.83%), Postives = 21/29 (72.41%), Query Frame = 2

Query:   83 LKSQGKLVLLGAPEKSLELPAFPLLTGRK 169
            LK +G++V++GAP   L+LPA  ++ G K
Sbjct:  263 LKPKGQMVVVGAPAAPLQLPAIAIIDGGK 291

[Close]

BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.491e-17
Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 3

Query:  201 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 353
            KETQEM++F AKH I +DIE+I    +N+AM+RLAK+DVRYRFVIDVAN++
Sbjct:  303 KETQEMLEFCAKHKIVSDIELIKMSDINSAMDRLAKSDVRYRFVIDVANSL 353

HSP 2 Score: 33.4982 bits (75), Expect = 5.491e-17
Identity = 15/25 (60.00%), Postives = 20/25 (80.00%), Query Frame = 1

Query:   25 DGIIDTVSAVHPLMPLFGLVEISRK 99
            D IIDTVSA H L+PLF L++++ K
Sbjct:  245 DFIIDTVSAEHALLPLFSLLKVNGK 269

[Close]

BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.139e-17
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 3

Query:  201 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 353
            KETQEM++F AKH I +DIE+I    +N+AM+RL K+DVRYRFVIDVAN++
Sbjct:  302 KETQEMLEFCAKHKIVSDIELIKMSDINSAMDRLVKSDVRYRFVIDVANSL 352

HSP 2 Score: 34.6538 bits (78), Expect = 7.139e-17
Identity = 16/25 (64.00%), Postives = 20/25 (80.00%), Query Frame = 1

Query:   25 DGIIDTVSAVHPLMPLFGLVEISRK 99
            D IIDTVSA H L+PLF L+++S K
Sbjct:  244 DFIIDTVSAEHALLPLFSLLKVSGK 268

[Close]

BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: CADH_POPDE (Probable cinnamyl alcohol dehydrogenase OS=Populus deltoides PE=2 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 6.006e-14
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 3

Query:  201 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT 350
            KET+EM++F  +  + + IEVI  DY+NTA ERL K DVRYRFV+DVA +
Sbjct:  304 KETEEMLEFCKEKGVASMIEVIKMDYINTAFERLEKNDVRYRFVVDVAGS 353

HSP 2 Score: 29.261 bits (64), Expect = 6.006e-14
Identity = 14/27 (51.85%), Postives = 17/27 (62.96%), Query Frame = 1

Query:   19 Q*DGIIDTVSAVHPLMPLFGLVEISRK 99
            Q D IIDTV  VHPL P   L+++  K
Sbjct:  244 QLDYIIDTVPVVHPLEPYLSLLKLDGK 270

HSP 3 Score: 23.0978 bits (48), Expect = 6.006e-14
Identity = 11/29 (37.93%), Postives = 16/29 (55.17%), Query Frame = 2

Query:   83 LKSQGKLVLLGAPEKSLELPAFPLLTGRK 169
            LK  GKL+L+G     L+     ++ GRK
Sbjct:  265 LKLDGKLILMGVINAPLQFVTPMVMLGRK 293

[Close]

BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: CADH1_ARACO (Probable cinnamyl alcohol dehydrogenase 1 OS=Aralia cordata GN=CAD1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 7.765e-14
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 3

Query:  201 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT 350
            KET+EM+DF  +  I + IEV+  DY+NTA ERL K DVRYRFV+DVA +
Sbjct:  305 KETEEMLDFCNEKGITSTIEVVKMDYINTAFERLEKNDVRYRFVVDVAGS 354

HSP 2 Score: 26.9498 bits (58), Expect = 7.765e-14
Identity = 12/25 (48.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:   25 DGIIDTVSAVHPLMPLFGLVEISRK 99
            D IIDTV   HPL P   L+++  K
Sbjct:  247 DYIIDTVPVFHPLEPYLSLLKLDGK 271

HSP 3 Score: 23.0978 bits (48), Expect = 7.765e-14
Identity = 11/29 (37.93%), Postives = 17/29 (58.62%), Query Frame = 2

Query:   83 LKSQGKLVLLGAPEKSLELPAFPLLTGRK 169
            LK  GKL+L+G     L+  +  ++ GRK
Sbjct:  266 LKLDGKLILMGVINTPLQFISPMVMLGRK 294

[Close]

BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: CADH1_TOBAC (Probable cinnamyl alcohol dehydrogenase 1 OS=Nicotiana tabacum GN=CAD14 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 7.768e-14
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 3

Query:  201 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV 341
            KET+EM+DF  +  + + IE++  DY+NTAMERL K DVRYRFV+DV
Sbjct:  304 KETEEMLDFCKEKGVTSQIEIVKMDYINTAMERLEKNDVRYRFVVDV 350

HSP 2 Score: 26.9498 bits (58), Expect = 7.768e-14
Identity = 13/25 (52.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:   25 DGIIDTVSAVHPLMPLFGLVEISRK 99
            D IIDTV   HPL P   L++I  K
Sbjct:  246 DYIIDTVPVGHPLEPYLSLLKIDGK 270

HSP 3 Score: 23.0978 bits (48), Expect = 7.768e-14
Identity = 11/29 (37.93%), Postives = 17/29 (58.62%), Query Frame = 2

Query:   83 LKSQGKLVLLGAPEKSLELPAFPLLTGRK 169
            LK  GKL+L+G     L+  +  ++ GRK
Sbjct:  265 LKIDGKLILMGVINTPLQFISPMVMLGRK 293

[Close]

BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: CADH2_PICAB (Probable cinnamyl alcohol dehydrogenase 2 OS=Picea abies GN=CAD2 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.005e-13
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 3

Query:  201 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT 350
            +ETQE +DF A+  + + IEV+  DY+NTAMERL K DVRYRFV+DVA +
Sbjct:  304 EETQETLDFCAEKKVSSMIEVVGLDYINTAMERLVKNDVRYRFVVDVARS 353

HSP 2 Score: 25.0238 bits (53), Expect = 1.005e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:   25 DGIIDTVSAVHPLMPLFGLVEISRK 99
            D I+DT+   HPL P   L++ + K
Sbjct:  246 DYIMDTIPVAHPLEPYLALLKTNGK 270

HSP 3 Score: 24.2534 bits (51), Expect = 1.005e-13
Identity = 12/29 (41.38%), Postives = 17/29 (58.62%), Query Frame = 2

Query:   83 LKSQGKLVLLGAPEKSLELPAFPLLTGRK 169
            LK+ GKLV+LG   + L      L+ GR+
Sbjct:  265 LKTNGKLVMLGVVPEPLHFVTPLLILGRR 293

[Close]

BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: CADH_PINRA (Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.299e-13
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 3

Query:  201 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT 350
            +ETQE +DF A+  + + IEV+  DY+NTAMERL K DVRYRFV+DVA +
Sbjct:  304 EETQETLDFCAEKKVSSMIEVVGLDYINTAMERLEKNDVRYRFVVDVAGS 353

HSP 2 Score: 25.0238 bits (53), Expect = 1.299e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:   25 DGIIDTVSAVHPLMPLFGLVEISRK 99
            D I+DT+   HPL P   L++ + K
Sbjct:  246 DYIMDTIPVAHPLEPYLALLKTNGK 270

HSP 3 Score: 24.2534 bits (51), Expect = 1.299e-13
Identity = 12/29 (41.38%), Postives = 17/29 (58.62%), Query Frame = 2

Query:   83 LKSQGKLVLLGAPEKSLELPAFPLLTGRK 169
            LK+ GKLV+LG   + L      L+ GR+
Sbjct:  265 LKTNGKLVMLGVVPEPLHFVTPLLILGRR 293

[Close]

BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: CADH7_PICAB (Probable cinnamyl alcohol dehydrogenase 7/8 OS=Picea abies GN=CAD7 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.299e-13
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 3

Query:  201 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVA 344
            +ETQE +DF A+  + + IEV+  DY+NTAMERL K DVRYRFV+DVA
Sbjct:  304 EETQETLDFCAEKKVSSMIEVVGLDYINTAMERLVKNDVRYRFVVDVA 351

HSP 2 Score: 25.0238 bits (53), Expect = 1.299e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:   25 DGIIDTVSAVHPLMPLFGLVEISRK 99
            D I+DT+   HPL P   L++ + K
Sbjct:  246 DYIMDTIPVAHPLEPYLALLKTNGK 270

HSP 3 Score: 24.2534 bits (51), Expect = 1.299e-13
Identity = 12/29 (41.38%), Postives = 17/29 (58.62%), Query Frame = 2

Query:   83 LKSQGKLVLLGAPEKSLELPAFPLLTGRK 169
            LK+ GKLV+LG   + L      L+ GR+
Sbjct:  265 LKTNGKLVMLGVVPEPLHFVTPLLILGRR 293

[Close]

BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: CADH_EUCBO (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus botryoides GN=CAD1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.680e-13
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 3

Query:  201 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT 350
            KET+EM++F  +  + + IEVI  DYVNTA+ERL K DVRYRFV+DVA +
Sbjct:  303 KETEEMLEFCKEKGLTSQIEVIKMDYVNTALERLEKNDVRYRFVVDVAGS 352

HSP 2 Score: 26.9498 bits (58), Expect = 1.680e-13
Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:   25 DGIIDTVSAVHPLMPLFGLVEISRK 99
            D I DT+  VHPL P   L+++  K
Sbjct:  245 DYIFDTIPVVHPLEPYLALLKLDGK 269

HSP 3 Score: 21.9422 bits (45), Expect = 1.680e-13
Identity = 11/29 (37.93%), Postives = 16/29 (55.17%), Query Frame = 2

Query:   83 LKSQGKLVLLGAPEKSLELPAFPLLTGRK 169
            LK  GKL+L G     L+  +  ++ GRK
Sbjct:  264 LKLDGKLILTGVINAPLQFISPMVMLGRK 292

The following BLAST results are available for this feature:

BLAST of FC872523 vs. ExPASy Swiss-Prot

BLAST of FC872523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42


Match Name	E-value	Identity	Description
CAD8A_ORYSJ	4.390e-17	58.00	Probable cinnamyl alcohol dehydrogenase 8A OS=Oryz...	[more]
CADH2_ARATH	5.491e-17	66.67	Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th...	[more]
CADH3_ARATH	7.139e-17	64.71	Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th...	[more]
CADH_POPDE	6.006e-14	58.00	Probable cinnamyl alcohol dehydrogenase OS=Populus...	[more]
CADH1_ARACO	7.765e-14	60.00	Probable cinnamyl alcohol dehydrogenase 1 OS=Arali...	[more]
CADH1_TOBAC	7.768e-14	59.57	Probable cinnamyl alcohol dehydrogenase 1 OS=Nicot...	[more]
CADH2_PICAB	1.005e-13	60.00	Probable cinnamyl alcohol dehydrogenase 2 OS=Picea...	[more]
CADH_PINRA	1.299e-13	60.00	Probable cinnamyl alcohol dehydrogenase OS=Pinus r...	[more]
CADH7_PICAB	1.299e-13	62.50	Probable cinnamyl alcohol dehydrogenase 7/8 OS=Pic...	[more]
CADH_EUCBO	1.680e-13	60.00	Probable cinnamyl alcohol dehydrogenase OS=Eucalyp...	[more]

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Properties


Property Name	Value
Genbank description	KN0AAB3AH10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AH10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC872523 ID=FC872523; Name=FC872523; organism=Citrus clementina; type=EST; length=511bp
CAGGCTTGCCATAGGGCACAATAGGATGGTATCATCGATACAGTATCTGC
AGTTCACCCGCTAATGCCGTTGTTCGGACTGGTTGAAATCTCAAGGAAAG
CTAGTACTTCTTGGTGCACCCGAGAAGTCACTAGAGCTACCAGCTTTCCC
CCTGCTCACGGGGAGGAAGTATAGTTGGTGGCAGTCTCATTGGGGGGTTG
AAGGAGACTCAAGAGATGATTGATTTTGCAGCAAAACACAACATCAGAGC
TGATATTGAGGTCATACCGGCCGACTATGTGAACACAGCCATGGAGCGCC
TTGCTAAAGCCGATGTTAGATATCGCTTTGTCATCGACGTTGCAAACACA
ATGAAGTCCACTCCTTAAATTTTCTCCCTTTTGAGTTGCGCTTAAAACGA
GGAATGTGCGTTTATTGTTGAGTCACAACATCGTCTAAGTTTTAGATTAT
GTTAGTCTTTTGTTGTGATTTCAAAACTGTTTTTACTTTTTAAGAATAAT
AATTTCGTGAC