FC872523

Overview
NameFC872523
Unique NameFC872523
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: ADHC_MYCBO (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium bovis GN=adhC PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 4.467e-11
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 3
Query:  204 ETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVA 344
            ETQEM++F A+H +  +IE+I  DY+N A ER+  +DVRYRFVID++
Sbjct:  298 ETQEMLNFCAEHGVTPEIELIEPDYINDAYERVLASDVRYRFVIDIS 344          

HSP 2 Score: 25.409 bits (54), Expect = 4.467e-11
Identity = 13/29 (44.83%), Postives = 16/29 (55.17%), Query Frame = 2
Query:   83 LKSQGKLVLLGAPEKSLELPAFPLLTGRK 169
            L   G LV LG PE  + +PAF L   R+
Sbjct:  258 LDVDGTLVELGIPEHPMAVPAFALALMRR 286          
BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: CADH_LOLPR (Probable cinnamyl alcohol dehydrogenase OS=Lolium perenne PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 7.905e-11
Identity = 24/50 (48.00%), Postives = 36/50 (72.00%), Query Frame = 3
Query:  201 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT 350
            +ET+E++ F     + + IEV+  DY+N A+ERL + DVRYRFV+DVA +
Sbjct:  305 EETEEVLRFCVDKGLTSQIEVVKMDYLNQALERLERNDVRYRFVVDVAGS 354          

HSP 2 Score: 26.1794 bits (56), Expect = 7.905e-11
Identity = 12/25 (48.00%), Postives = 15/25 (60.00%), Query Frame = 1
Query:   25 DGIIDTVSAVHPLMPLFGLVEISRK 99
            D IIDTV   HPL P   L+++  K
Sbjct:  247 DYIIDTVPVKHPLEPYLALLKMDGK 271          

HSP 3 Score: 23.483 bits (49), Expect = 7.905e-11
Identity = 12/29 (41.38%), Postives = 17/29 (58.62%), Query Frame = 2
Query:   83 LKSQGKLVLLGAPEKSLELPAFPLLTGRK 169
            LK  GKLVL+G   + L   +  ++ GRK
Sbjct:  266 LKMDGKLVLMGVIGEPLSFVSPMVMLGRK 294          
The following BLAST results are available for this feature:
BLAST of FC872523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
ADHC_MYCBO4.467e-1155.32NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
CADH_LOLPR7.905e-1148.00Probable cinnamyl alcohol dehydrogenase OS=Lolium ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AH10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872523 ID=FC872523; Name=FC872523; organism=Citrus clementina; type=EST; length=511bp
CAGGCTTGCCATAGGGCACAATAGGATGGTATCATCGATACAGTATCTGC
AGTTCACCCGCTAATGCCGTTGTTCGGACTGGTTGAAATCTCAAGGAAAG
CTAGTACTTCTTGGTGCACCCGAGAAGTCACTAGAGCTACCAGCTTTCCC
CCTGCTCACGGGGAGGAAGTATAGTTGGTGGCAGTCTCATTGGGGGGTTG
AAGGAGACTCAAGAGATGATTGATTTTGCAGCAAAACACAACATCAGAGC
TGATATTGAGGTCATACCGGCCGACTATGTGAACACAGCCATGGAGCGCC
TTGCTAAAGCCGATGTTAGATATCGCTTTGTCATCGACGTTGCAAACACA
ATGAAGTCCACTCCTTAAATTTTCTCCCTTTTGAGTTGCGCTTAAAACGA
GGAATGTGCGTTTATTGTTGAGTCACAACATCGTCTAAGTTTTAGATTAT
GTTAGTCTTTTGTTGTGATTTCAAAACTGTTTTTACTTTTTAAGAATAAT
AATTTCGTGAC
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