FC872527

Overview
NameFC872527
Unique NameFC872527
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length863
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872527 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.554e-31
Identity = 77/217 (35.48%), Postives = 110/217 (50.69%), Query Frame = 3
Query:    9 FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 644
            FYT  +F+ AA+++  F N       KREIAAFFA   HET                C+  E+  A+ DYCD +   +PC+   KYYGRGP+Q++WN+NY   G+ +G   D L +PD +A +      +SFK+A+WFWM                     N+V+     G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  109 FYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGF--DGLRDPDKVAQDP----TISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of FC872527 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.350e-30
Identity = 81/218 (37.16%), Postives = 112/218 (51.38%), Query Frame = 3
Query:    9 FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP---NYPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRN-RIGFFTTFCGKFGIQPGDNLDC 644
            FYT  AF+ A K +P F + G++   KREIAAFFA   HET               +C+  E+   S+ YCDP    +PC    KYYGRGP+Q++WNYNY   G  +  G D L +P  +A +     V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG G N A  N R+G++  +C + G+ PG NL C
Sbjct:   94 FYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEIN-KSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAI--GFDGLGDPGRVARD----AVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECG-GNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of FC872527 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.303e-30
Identity = 76/216 (35.19%), Postives = 113/216 (52.31%), Query Frame = 3
Query:    9 FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 644
            FYT   F+EA  A+P FG    +  RKREIAA+FA   HET                C+  E    +++YC  +  YPC    +Y+GRGP+QL+WNYNY+  G+ L    D LN+PD++  +     ++SFK+++WFW+     +     VI+D  +            G+G T  IINGG EC       +  R+G++  +C + G+ PG+NL C
Sbjct:   71 FYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGH-------------LCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKELHF--DGLNDPDIVGRDP----IISFKTSLWFWI-----RKGVQYVILDPNQ------------GFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of FC872527 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.547e-29
Identity = 79/223 (35.43%), Postives = 108/223 (48.43%), Query Frame = 3
Query:    9 FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN----YPCRGK--YYGRGPIQLTWNYNYLRCG-----EGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 644
            FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +C+  E+  AS DYCD      YPC     Y+GRGPIQL+WN+NY   G     +GLG  E + N+            V+SFK+A+W+WM    P       +I++              G+G T   ING +EC       V+ R+ ++T +C + G+  GDNL C
Sbjct:   93 FYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGH-------------FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDV-----------VVSFKTALWYWMQHVRP-------VINQ--------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of FC872527 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.674e-29
Identity = 79/218 (36.24%), Postives = 110/218 (50.46%), Query Frame = 3
Query:    9 FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRN-RIGFFTTFCGKFGIQPGDNLDC 644
            FYT  AF+ A  A+P F + G E   KREIAAFFA   HET               +C+  E+   S+ YCD +   +PC    KYYGRGP+Q++WNYNY   G  +G     L +P+ +A    +  V++FK+A+WFWM                     N+V+     G+G T   ING +EC  G N A  N R+G++  +C +  + PG NL C
Sbjct:  105 FYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEIN-KSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNG--LADPNRVA----QDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECN-GNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of FC872527 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.395e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 3
Query:  411 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 548
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of FC872527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI4_ORYSJ3.554e-3135.48Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE1.350e-3037.16Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIT_DIOJA2.303e-3035.19Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_PHAVU2.547e-2935.43Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIA_MAIZE5.674e-2936.24Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_ARAHY2.395e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CA03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872527 ID=FC872527; Name=FC872527; organism=Citrus clementina; type=EST; length=863bp
GGGGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTT
CCAGCCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGC
TGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATG
CACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGC
GCTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTA
CTATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGT
GCGGAGAAGGCCTAGGGCGAGGAGAGGACTTGTTGAACAATCCAGACCTT
CTTGCTACTAATGATAAAGAAGGACGAGTACTATCATTCAAGTCGGCAAT
CTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCA
TTATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTT
CCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATGTGG
CTACGGTGGGAATGACGCTGTACGTAACCGTATTGGGTTCTTTACCACTT
TCTGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTGCTCCAAC
CAACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGTGATCATCATG
ATCAACGTTTTAGTAAAATAGGCTTAATAAAAGCTACTTAATAAAAACTT
TAGATGTCACACTTGTAGGTGGACAACTAAACTGTTACGCTCTTATTGTA
AGTAAATTAAATAAGACTGATCCCACATGGATCAATGAGTCTTCTCAAAA
AAAAAAAAAAAAA
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