FC872533

Overview
NameFC872533
Unique NameFC872533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.136e-16
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 379
            I+C QV   ++PC+SY   G     ACC G+R+LN+A+ TT DRRT CNC+K  A  I GLN     ++P  C    PY ++  +DCS
Sbjct:   28 ISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCS 115          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.483e-16
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 379
            I+C QV   ++PC+SY   G     ACC G+R+LN+A+ TT DRRT CNC+K  A  I GLN     ++P  C    PY ++  +DCS
Sbjct:   27 ISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCS 114          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.937e-16
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 382
            ITC QV   + PC++Y   G     ACC G+R+L AA+ TT DRRT CNC+K  A  I GLN     ++P  C    PY ++  +DCS+
Sbjct:   26 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSR 114          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.937e-16
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 382
            ITC QV   + PC++Y   G     ACC G+R+L AA+ TT DRRT CNC+K  A  I GLN     ++P  C    PY ++  +DCS+
Sbjct:   26 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSR 114          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.530e-16
Identity = 41/87 (47.13%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDC 376
            ITC QV+  L PCI+Y   GG V   CC+G+R+LN A+KTT DR+  CNC+K     I GLN +    LP  C    PYK++   DC
Sbjct:    1 ITCGQVSSSLAPCINYLRAGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDC 87          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.637e-16
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 379
            ITC  V+  L PCI Y + GG +   CC GI+ALNAA+ TT DR+T CNC+K  A  I G+NY +   LP +C    PY ++   +C+
Sbjct:   28 ITCGMVSSKLAPCIGY-LKGGPLGGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCN 114          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.142e-15
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISY--GVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 379
            +T  QVT  L PCI+Y  G   GAV P CC GI++LN+A++TT  R+  C C+K  AA I G+N+   + LP  C    PYK++   DC+
Sbjct:   28 VTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCN 117          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.142e-15
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISY--GVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 379
            +T  QVT  L PCI+Y  G   GAV P CC GI++LN+A++TT  R+  C C+K  AA I G+N+   + LP  C    PYK++   DC+
Sbjct:   24 VTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCN 113          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.654e-15
Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGV-LGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 382
            +TC QV+  + PC+SY    G      CC G+R+LN+A++TT DRR  CNC+K  A  I GLN  +  ++P  C    PY ++   DCS+
Sbjct:   31 VTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSR 120          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.772e-15
Identity = 38/90 (42.22%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGV-LGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 382
            I+C QV   + PCISY    G      CC G+R+LN A++TT DRR  CNC+K  AA + GLN     ++P  C    PY ++   DCS+
Sbjct:   29 ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSR 118          
The following BLAST results are available for this feature:
BLAST of FC872533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
NLT2A_ORYSJ1.136e-1644.32Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLT2B_ORYSJ1.483e-1644.32Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLTP1_ORYSJ1.937e-1643.82Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI1.937e-1643.82Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
LTP1_MORNI2.530e-1647.13Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_SPIOL5.637e-1645.45Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP2_GOSHI2.142e-1544.44Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI2.142e-1544.44Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP2_SORBI3.654e-1541.11Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP_MAIZE4.772e-1542.22Non-specific lipid-transfer protein OS=Zea mays PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CA09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872533 ID=FC872533; Name=FC872533; organism=Citrus clementina; type=EST; length=875bp
GGGGATTGCATAAACCATAATTACAATGGCTGCTCAATTTCGAAAGGTGC
CATTAACAGTGTCTATTGCAACAATGTTGTTGTTATTGTTGGCTCCCCTG
AATGCAGCAACAACAATAACATGTGAGCAAGTGACAATCTGGCTGACACC
ATGCATCAGCTATGGCGTATTGGGTGGGGCTGTTCAACCAGCTTGTTGTG
ATGGCATTAGAGCTTTGAATGCTGCTTCAAAAACCACAGAAGATAGAAGG
ACCCAATGTAATTGTGTGAAGGAAGGTGCTGCTAGGATCCCTGGTCTCAA
CTATGATCGTGTTAATACGCTTCCTGATATTTGTCGGAGTAAATGTCCTT
ATAAACTTACACATGATCTTGATTGCTCTAAGTACGCCCTTAATTCTTAT
CTTAGCTAGCTTGTTATTGCTTGTTTTCTTTTTATAATCTTCTCTGGCAT
ATGTGTATATATATGTTAAGATTAAATTATTTATATTTTTATTCAATAAT
TACCATCACAATATTAAGAAAAAATCTTAACACAATCTCTCGACCAATTA
ATTTTTACCTTTTGGGTTTGATTTTATTGTAGGGTGAACTAAATCTGCAG
TTTGCACGGGCGGGGGTATCTGGTTTATTGATAAGTCACGAATGAAGTCT
ACAAAGAGAATAAGGCTGCTACTTTTGGCTTATTGTCCTAAAAATATCTT
CTATTACTCTAAAATAAAGCCTGAGATATTTTATTGGCATTTTGCATTTT
ACATTATTATACAAGTCATTCTAATGATATGTGTTGCAATGTAAACATAT
ATGATATTTACGTGTGCAAAGTGAATGTCCTTTCTTTATTCTTATGGCTA
AAAAAAAAAAAAAAAAAAAAAAAAA
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