FC872533

Overview
NameFC872533
Unique NameFC872533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.950e-13
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQP-ACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 382
            I+C QV+  L+PCISY    GA  P ACC G++ L  A+++T D++  C C+K  A    GLN  +   +P +C    PY ++  +DCSK
Sbjct:   27 ISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSK 113          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.950e-13
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQP-ACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 382
            I+C QV+  L+PCISY    GA  P ACC G++ L  A+++T D++  C C+K  A    GLN  +   +P +C    PY ++  +DCSK
Sbjct:   27 ISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSK 113          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.950e-13
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQPA-CCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 382
            I+C QV+  L+PCISY    GA  PA CC G++ L  A+++T D++  C C+K  A    GLN  +   +P +C    PY ++  +DCSK
Sbjct:   27 ISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSK 113          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.697e-12
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISY--GVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 382
            +TC QVT  L PC+ Y    +   V   CC+ +R LN A++TT D+RT C C+K+ A  + GLN +    LP  C    PYK++   DC++
Sbjct:   28 LTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNR 118          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.697e-12
Identity = 35/88 (39.77%), Postives = 47/88 (53.41%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 379
            ITC +V   L PC+ Y   G      CC G+R LN+A+ TT DR+  CNC+K  A  I  LN +    LP  C    PYK++   +C+
Sbjct:   25 ITCGRVDTALAPCLGYLQGGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCA 112          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.895e-12
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISY----GVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 382
            +TC QVT  L PC+ Y    G LGG     CC G++ L   ++TT DR+  C C+K  A+    L+  +  +LP  C    PYK++   DCSK
Sbjct:   25 LTCGQVTSTLAPCLPYLMNRGPLGG-----CCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSK 112          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.423e-12
Identity = 33/88 (37.50%), Postives = 46/88 (52.27%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 379
            I C QV ++L  C+ Y   GG   P CC+G+ +L AA+    DR+  CNC+K  A  IPG+N D    LP  C        +  +DC+
Sbjct:   29 IACPQVNMYLAQCLPYLKAGGNPSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCN 116          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.423e-12
Identity = 33/89 (37.08%), Postives = 49/89 (55.06%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 382
            ++C QV   L PC+ Y + G     +CC G++ L  A+K+  DR+T C C+K  A  I G++  +   LP  C    PYK++   DCSK
Sbjct:   25 LSCGQVQSGLAPCLPY-LQGRGPLGSCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSK 112          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.100e-11
Identity = 31/89 (34.83%), Postives = 49/89 (55.06%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 382
            ++C  V   L PCI+Y    G +  ACC+G++ L  ++ TT+DRRT C C+   +  I G+N+     LP  C    PYK++   +C +
Sbjct:    1 LSCGDVATQLAPCINYLRSAGPLPVACCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQ 89          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.100e-11
Identity = 34/88 (38.64%), Postives = 46/88 (52.27%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 379
            ++C  VT  L PCI Y   G     +CC G++ L AA+ TT DR+  CNC+K  A  I  LN      LP  C    PYK++   +C+
Sbjct:   27 VSCGTVTGDLAPCIPYLTGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCN 114          
The following BLAST results are available for this feature:
BLAST of FC872533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
NLT43_HORVU9.950e-1340.00Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLT42_HORVU9.950e-1340.00Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLT41_HORVU9.950e-1340.00Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLTP_DAUCA1.697e-1239.56Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP_CICAR1.697e-1239.77Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP2_SOLCI2.895e-1238.71Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTPB_ARATH8.423e-1237.50Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTP2_TOBAC8.423e-1237.08Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP5_VITSX1.100e-1134.83Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLTP3_LENCU1.100e-1138.64Non-specific lipid-transfer protein 3 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CA09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872533 ID=FC872533; Name=FC872533; organism=Citrus clementina; type=EST; length=875bp
GGGGATTGCATAAACCATAATTACAATGGCTGCTCAATTTCGAAAGGTGC
CATTAACAGTGTCTATTGCAACAATGTTGTTGTTATTGTTGGCTCCCCTG
AATGCAGCAACAACAATAACATGTGAGCAAGTGACAATCTGGCTGACACC
ATGCATCAGCTATGGCGTATTGGGTGGGGCTGTTCAACCAGCTTGTTGTG
ATGGCATTAGAGCTTTGAATGCTGCTTCAAAAACCACAGAAGATAGAAGG
ACCCAATGTAATTGTGTGAAGGAAGGTGCTGCTAGGATCCCTGGTCTCAA
CTATGATCGTGTTAATACGCTTCCTGATATTTGTCGGAGTAAATGTCCTT
ATAAACTTACACATGATCTTGATTGCTCTAAGTACGCCCTTAATTCTTAT
CTTAGCTAGCTTGTTATTGCTTGTTTTCTTTTTATAATCTTCTCTGGCAT
ATGTGTATATATATGTTAAGATTAAATTATTTATATTTTTATTCAATAAT
TACCATCACAATATTAAGAAAAAATCTTAACACAATCTCTCGACCAATTA
ATTTTTACCTTTTGGGTTTGATTTTATTGTAGGGTGAACTAAATCTGCAG
TTTGCACGGGCGGGGGTATCTGGTTTATTGATAAGTCACGAATGAAGTCT
ACAAAGAGAATAAGGCTGCTACTTTTGGCTTATTGTCCTAAAAATATCTT
CTATTACTCTAAAATAAAGCCTGAGATATTTTATTGGCATTTTGCATTTT
ACATTATTATACAAGTCATTCTAATGATATGTGTTGCAATGTAAACATAT
ATGATATTTACGTGTGCAAAGTGAATGTCCTTTCTTTATTCTTATGGCTA
AAAAAAAAAAAAAAAAAAAAAAAAA
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