FC872533

Overview
NameFC872533
Unique NameFC872533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.876e-11
Identity = 31/89 (34.83%), Postives = 51/89 (57.30%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 382
            + C QV   + PC++Y   G      CC+G+R L+  ++++ DR+T CNC+K  A  I  LN +   ++P  C    PY ++ D+DCS+
Sbjct:   27 LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSR 115          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.451e-11
Identity = 37/95 (38.95%), Postives = 49/95 (51.58%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQPA--CCDGIRALNAASKTTEDRRTQCNCVKEGAARI-PGLNYDRVNTLPDICRSKCPY--KLTHDLDCSKY 385
            ++C +V   L PC  Y   GG   P   CC+G+R LN    TT DRR  C C+K  A  + PGLN DR   +P  C  K PY  ++  +  C+ Y
Sbjct:   27 LSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCNTY 121          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.180e-11
Identity = 32/91 (35.16%), Postives = 51/91 (56.04%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQPA--CCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 382
            ++C  VT  + PC+SY V+G    P+  CC G+R LN  + ++ DRRT C+C+K  A+    LN     ++P  C     + ++  +DCSK
Sbjct:   30 VSCGDVTSSIAPCLSY-VMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSK 119          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.180e-11
Identity = 32/91 (35.16%), Postives = 51/91 (56.04%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQPA--CCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 382
            ++C  VT  + PC+SY V+G    P+  CC G+R LN  + ++ DRRT C+C+K  A+    LN     ++P  C     + ++  +DCSK
Sbjct:   30 VSCGDVTSSIAPCLSY-VMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSK 119          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.460e-11
Identity = 31/89 (34.83%), Postives = 49/89 (55.06%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 382
            I C  V   + PC+SY   G      CCDG++ L+  +++  DR++ CNC+K  A  I  LN D   ++P  C    PY ++ ++DCS+
Sbjct:   24 IDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSR 112          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.131e-11
Identity = 34/90 (37.78%), Postives = 50/90 (55.56%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQPA--CCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 379
            +TC  VT  L PC++Y    GA  P   CC G+R+L AA++T  DRR  CNC+K  A +   LNY     L   C  +  Y ++ +++C+
Sbjct:    2 VTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCN 91          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.131e-11
Identity = 34/90 (37.78%), Postives = 50/90 (55.56%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQPA--CCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 379
            +TC  VT  L PC++Y    GA  P   CC G+R+L AA++T  DRR  CNC+K  A +   LNY     L   C  +  Y ++ +++C+
Sbjct:    2 VTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCN 91          
BLAST of FC872533 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.313e-11
Identity = 32/88 (36.36%), Postives = 47/88 (53.41%), Query Frame = 2
Query:  116 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 379
            ITC  V   L+PC+ Y   GG V P CC G++ LN  ++TT DR+  C C++  A    G+N    + LP  C    PY ++   +C+
Sbjct:   25 ITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAA---KGVNPSLASGLPGKCGVSIPYPISTSTNCA 109          
The following BLAST results are available for this feature:
BLAST of FC872533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
NLTP1_HORVU1.876e-1134.83Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP7_ARATH2.451e-1138.95Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTP3_ORYSJ4.180e-1135.16Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI4.180e-1135.16Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP1_WHEAT5.460e-1134.83Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTP_AMACA7.131e-1137.78Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP7.131e-1137.78Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP4_ARATH9.313e-1136.36Non-specific lipid-transfer protein 4 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CA09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872533 ID=FC872533; Name=FC872533; organism=Citrus clementina; type=EST; length=875bp
GGGGATTGCATAAACCATAATTACAATGGCTGCTCAATTTCGAAAGGTGC
CATTAACAGTGTCTATTGCAACAATGTTGTTGTTATTGTTGGCTCCCCTG
AATGCAGCAACAACAATAACATGTGAGCAAGTGACAATCTGGCTGACACC
ATGCATCAGCTATGGCGTATTGGGTGGGGCTGTTCAACCAGCTTGTTGTG
ATGGCATTAGAGCTTTGAATGCTGCTTCAAAAACCACAGAAGATAGAAGG
ACCCAATGTAATTGTGTGAAGGAAGGTGCTGCTAGGATCCCTGGTCTCAA
CTATGATCGTGTTAATACGCTTCCTGATATTTGTCGGAGTAAATGTCCTT
ATAAACTTACACATGATCTTGATTGCTCTAAGTACGCCCTTAATTCTTAT
CTTAGCTAGCTTGTTATTGCTTGTTTTCTTTTTATAATCTTCTCTGGCAT
ATGTGTATATATATGTTAAGATTAAATTATTTATATTTTTATTCAATAAT
TACCATCACAATATTAAGAAAAAATCTTAACACAATCTCTCGACCAATTA
ATTTTTACCTTTTGGGTTTGATTTTATTGTAGGGTGAACTAAATCTGCAG
TTTGCACGGGCGGGGGTATCTGGTTTATTGATAAGTCACGAATGAAGTCT
ACAAAGAGAATAAGGCTGCTACTTTTGGCTTATTGTCCTAAAAATATCTT
CTATTACTCTAAAATAAAGCCTGAGATATTTTATTGGCATTTTGCATTTT
ACATTATTATACAAGTCATTCTAATGATATGTGTTGCAATGTAAACATAT
ATGATATTTACGTGTGCAAAGTGAATGTCCTTTCTTTATTCTTATGGCTA
AAAAAAAAAAAAAAAAAAAAAAAAA
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