FC872595

Overview
NameFC872595
Unique NameFC872595
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length904
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872595 vs. ExPASy Swiss-Prot
Match: VDAC2_PIG (Voltage-dependent anion-selective channel protein 2 OS=Sus scrofa GN=VDAC2 PE=2 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 2.710e-11
Identity = 37/129 (28.68%), Postives = 55/129 (42.64%), Query Frame = 3
Query:  519 GTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGL 902
            G  ++FD+A    T+ N  + Y   D      +ND G     S Y  V    +T+V   L  +  +N     I  ++ LDP  S+ A+VNN            RP    T+S  VD ++I     K+GL
Sbjct:  163 GYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNVND-GTEFGGSIYQKVCEDLDTSVN--LAWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKLGL 288          

HSP 2 Score: 41.9726 bits (97), Expect = 2.710e-11
Identity = 40/146 (27.40%), Postives = 66/146 (45.21%), Query Frame = 2
Query:  104 PGLYSEIGKKARDPLYKDYQSD-HKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIFSFIV---PDQRSGKVELQYQHEYAGISTGIGFT-ANPIVNFSGV----GW 499
            P  Y+++GK ARD   K +     K  V T + +GV  ++SG    +      + + K K     +T   K +T++ L T I + D+   GLK  F         ++SGK++  Y+ E   +   + F  A P ++ S V    GW
Sbjct:   15 PPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKRECVNLGCDVDFDFAGPAIHGSAVFGYEGW 160          
BLAST of FC872595 vs. ExPASy Swiss-Prot
Match: VDAC2_RABIT (Voltage-dependent anion-selective channel protein 2 OS=Oryctolagus cuniculus GN=VDAC2 PE=2 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 3.519e-11
Identity = 37/129 (28.68%), Postives = 55/129 (42.64%), Query Frame = 3
Query:  519 GTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGL 902
            G  ++FD+A    T+ N  + Y   D      +ND G     S Y  V    +T+V   L  +  +N     I  ++ LDP  S+ A+VNN            RP    T+S  VD ++I     K+GL
Sbjct:  163 GYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNVND-GTEFGGSIYQKVCEDLDTSVN--LAWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKLGL 288          

HSP 2 Score: 41.5874 bits (96), Expect = 3.519e-11
Identity = 40/146 (27.40%), Postives = 66/146 (45.21%), Query Frame = 2
Query:  104 PGLYSEIGKKARDPLYKDYQSD-HKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIFSFIV---PDQRSGKVELQYQHEYAGISTGIGFT-ANPIVNFSGV----GW 499
            P  Y+++GK ARD   K +     K  V T + +GV  ++SG    +      + + K K     +T   K +T++ L T I + D+   GLK  F         ++SGK++  Y+ E   +   + F  A P ++ S V    GW
Sbjct:   15 PPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGW 160          
BLAST of FC872595 vs. ExPASy Swiss-Prot
Match: VDAC2_BOVIN (Voltage-dependent anion-selective channel protein 2 OS=Bos taurus GN=VDAC2 PE=2 SV=2)

HSP 1 Score: 47.7506 bits (112), Expect = 3.519e-11
Identity = 37/129 (28.68%), Postives = 55/129 (42.64%), Query Frame = 3
Query:  519 GTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGL 902
            G  ++FD+A    T+ N  + Y   D      +ND G     S Y  V    +T+V   L  +  +N     I  ++ LDP  S+ A+VNN            RP    T+S  VD ++I     K+GL
Sbjct:  163 GYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNVND-GTEFGGSIYQKVCEDLDTSVN--LAWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKLGL 288          

HSP 2 Score: 41.5874 bits (96), Expect = 3.519e-11
Identity = 40/146 (27.40%), Postives = 66/146 (45.21%), Query Frame = 2
Query:  104 PGLYSEIGKKARDPLYKDYQSD-HKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIFSFIV---PDQRSGKVELQYQHEYAGISTGIGFT-ANPIVNFSGV----GW 499
            P  Y+++GK ARD   K +     K  V T + +GV  ++SG    +      + + K K     +T   K +T++ L T I + D+   GLK  F         ++SGK++  Y+ E   +   + F  A P ++ S V    GW
Sbjct:   15 PPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGW 160          
The following BLAST results are available for this feature:
BLAST of FC872595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
VDAC2_PIG2.710e-1128.68Voltage-dependent anion-selective channel protein ... [more]
VDAC2_RABIT3.519e-1128.68Voltage-dependent anion-selective channel protein ... [more]
VDAC2_BOVIN3.519e-1128.68Voltage-dependent anion-selective channel protein ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BB12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872595 ID=FC872595; Name=FC872595; organism=Citrus clementina; type=EST; length=904bp
GGGGAGGGTTTTGATTTCATAATCTTCCTCCAGCTGAAATAATCAAAACT
GATATTTCTCAGCGTTTCCTTTCCATTTTCTCTGGAGAATCATGGTGAAA
GGCCCCGGGCTCTACTCTGAAATCGGCAAGAAAGCCCGAGATCCTCTCTA
CAAGGACTACCAGAGCGACCACAAGTTCACTGTCACTACTTACACGTCAG
CTGGAGTCGCGATAACTTCGAGTGGTGTTAAGAAAGGTGAGCTTTTTTTG
GCTGATGTCAGCACTCAGTTGAAGAACAAGAACATCACTACTGATGTTAA
AGTTGATACTAACTCTAATCTTTTTACAACCATCACTGTCGATGAGCCTG
CTCCTGGACTCAAGTCAATCTTTAGCTTTATCGTTCCTGATCAGAGATCT
GGCAAGGTGGAACTCCAATATCAGCATGAATATGCTGGAATAAGCACTGG
CATTGGATTCACTGCAAATCCCATTGTTAACTTTTCTGGTGTTGGTTGGA
AACAATTCTGTTGCTCTTGGGACTGATCTCTCATTTGATACTGCCACTGG
CAACTTCACCAAGTGCAATGCGGGGCTGAGCTATACACATACTGACCTCA
TTGCTTCCCTGACATTGAATGACAAAGGTGACACCCTTAATGCTTCCTAC
TACCACATTGTAAGCCCACTGACCAATACCGCTGTTGGGGCGGAGCTGAC
CCATAGCTTTTCAAGCAACGAGAACACTCTGACAATCGGAACTCAGCATG
CTCTTGATCCTTTGACCTCGGTGAAGGCCCGTGTGAACAACTATGGCAGG
GCAAGTGCTCTTATCCAGCACGAGTGGCGTCCCAAATCTCTATTTACTAT
CTCAGGAGAGGTAGACACCAGGGCCATTGAAAAGAGTGCTAAAATTGGGC
TGGC
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