FC872606

Overview
NameFC872606
Unique NameFC872606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872606 vs. ExPASy Swiss-Prot
Match: P2C59_ORYSJ (Probable protein phosphatase 2C 59 OS=Oryza sativa subsp. japonica GN=Os06g0698300 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.736e-16
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    4 VAEPEI*DLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF----HHVNEDPAEPE 249
            VA+PEI +  VD   E L+LASDGLWDVV NE+AVA+ +   + E AA+KL + A  RGSADNITC+VVRF    +H+ E P   +
Sbjct:  240 VADPEIKEEVVDSSLEFLILASDGLWDVVTNEEAVAMVKPILDSEQAAKKLLQEASQRGSADNITCLVVRFLEQENHLPERPTNDQ 325          
BLAST of FC872606 vs. ExPASy Swiss-Prot
Match: P2C10_ORYSJ (Probable protein phosphatase 2C 10 OS=Oryza sativa subsp. japonica GN=Os02g0149800 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    4 VAEPEI*DLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 216
            VA+PEI +  VD   E L+LASDGLWDVV N++AV + R  ++PE AA++L + A+ RGSADNIT ++VRF
Sbjct:  258 VADPEIKEEIVDSSLEFLILASDGLWDVVSNKEAVDMVRPIQDPEQAAKRLLQEAYQRGSADNITVVIVRF 328          
BLAST of FC872606 vs. ExPASy Swiss-Prot
Match: P2C11_ARATH (Probable protein phosphatase 2C 11 OS=Arabidopsis thaliana GN=At1g43900 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.122e-14
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    4 VAEPEI*DLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 216
            +AEPEI + ++    E +V+ASDGLW+V+ N+DAVA+ R   + E AARKL +  + RGS DNITCIVVRF
Sbjct:  299 IAEPEIQEEDIST-LEFIVVASDGLWNVLSNKDAVAIVRDISDAETAARKLVQEGYARGSCDNITCIVVRF 368          
BLAST of FC872606 vs. ExPASy Swiss-Prot
Match: P2C09_ARATH (Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana GN=At1g22280 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.778e-12
Identity = 33/70 (47.14%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    7 AEPEI*DLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 216
            +EP+I +  VD   ++L+LASDG+W V+ NE+A+ +AR  ++P+ AA++LT  A  R S D+I+C+VVRF
Sbjct:  211 SEPDIKEATVDSQTDVLLLASDGIWKVMTNEEAMEIARRVKDPQKAAKELTAEALRRESKDDISCVVVRF 280          
BLAST of FC872606 vs. ExPASy Swiss-Prot
Match: P2C44_ORYSJ (Probable protein phosphatase 2C 44 OS=Oryza sativa subsp. japonica GN=Os04g0609600 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 30/70 (42.86%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    7 AEPEI*DLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 216
            +EP++  + ++   E ++LASDGLW V+ N++AV L ++ ++P+ AA++LT  A  R S D+I+CIV+RF
Sbjct:  250 SEPDVRHVPINSSIEFVILASDGLWKVMKNQEAVDLVKSIKDPQAAAKRLTTEALARKSKDDISCIVIRF 319          
BLAST of FC872606 vs. ExPASy Swiss-Prot
Match: P2C41_ORYSJ (Probable protein phosphatase 2C 41 OS=Oryza sativa subsp. japonica GN=Os04g0451900/Os04g0452000 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.287e-11
Identity = 34/70 (48.57%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    7 AEPEI*DLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 216
            +EP+I   ++D   ELLVLASDGLW V+ N++ V +A+  ++P+ AA++LT  A  R S D+I+C+VVRF
Sbjct:  213 SEPDIKVEDIDYTAELLVLASDGLWKVMNNQEVVDVAKRFKDPQAAAKQLTAEALKRDSKDDISCVVVRF 282          
BLAST of FC872606 vs. ExPASy Swiss-Prot
Match: P2C10_ARATH (Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.867e-11
Identity = 32/69 (46.38%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    7 AEPEI*DLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVR 213
            ++P++ D  +D+  ++LVLASDGLW V+ N++A+ +AR  ++P  AA++LT  A  R S D+I+CIVVR
Sbjct:  212 SDPDVKDSSIDDHTDVLVLASDGLWKVMANQEAIDIARRIKDPLKAAKELTTEALRRDSKDDISCIVVR 280          
The following BLAST results are available for this feature:
BLAST of FC872606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
P2C59_ORYSJ1.736e-1653.49Probable protein phosphatase 2C 59 OS=Oryza sativa... [more]
P2C10_ORYSJ1.125e-1556.34Probable protein phosphatase 2C 10 OS=Oryza sativa... [more]
P2C11_ARATH2.122e-1454.93Probable protein phosphatase 2C 11 OS=Arabidopsis ... [more]
P2C09_ARATH5.778e-1247.14Probable protein phosphatase 2C 9 OS=Arabidopsis t... [more]
P2C44_ORYSJ9.855e-1242.86Probable protein phosphatase 2C 44 OS=Oryza sativa... [more]
P2C41_ORYSJ1.287e-1148.57Probable protein phosphatase 2C 41 OS=Oryza sativa... [more]
P2C10_ARATH2.867e-1146.38Probable protein phosphatase 2C 10 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BC02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BC02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872606 ID=FC872606; Name=FC872606; organism=Citrus clementina; type=EST; length=604bp
GGGGTTGCGGAACCTGAGATCTAGGACCTTGAAGTAGATGAAGGATTTGA
GCTGCTTGTGCTTGCAAGTGATGGACTATGGGATGTAGTACCCAATGAGG
ATGCTGTTGCACTTGCCCGAACAGGGGAAGAACCTGAAATCGCAGCTCGG
AAGTTAACGGAGACTGCTTTCACCCGAGGCAGTGCTGACAACATAACGTG
CATTGTAGTGAGATTCCACCACGTCAATGAAGATCCAGCCGAACCTGAAG
TGGAGCAGGAGTAGGAATCTTCATTTATGTTGCATGGTGTAGGTTTATCG
ACCCTTTAGGCTGTAGATCATCTGGAAATCTGCACATGCATGGCTGAATG
TGCATAGCAACAGGGAGGAAGGCGATTTTTTTATTCATTGTTTCTTTTTT
TTCCCCGCACCCCCCTAATTTGAACCTTTCTGTATTGACTGCATATATTG
AGTCTTGGTTCATTCCAGAATAACTATTCCTCTTCGCTCCATAATGTGGC
CTGTAAATCTGTATGTCTAAATGCCCGTTCTGGGTATTTCGGTCTTAAGT
TAATAAAAACTCAAGGTTTTCTAGTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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