FC872615

Overview
NameFC872615
Unique NameFC872615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length946
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872615 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 7.656e-62
Identity = 120/239 (50.21%), Postives = 148/239 (61.92%), Query Frame = 2
Query:   23 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 739
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FP FG SG++T R +EIAAFF QT HETTGG   A    +  GYCF+ +                +YYGRGPIQLT   NY +                  ATD  +SFK+AIWFWMT Q  KPS H+VI   W PSA D +A R PG G+ TNIINGGIECG G N AV +RIG++  +CG   + PG NLDCY+Q+ F
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD-----------RYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLV--ATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of FC872615 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.444e-60
Identity = 114/251 (45.42%), Postives = 150/251 (59.76%), Query Frame = 2
Query:   38 SREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN----LNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP-KPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF---GLILMARSM 766
            +  MFE +LP RN+  CP +GFYTYDA+  A + +P FG +G++  R RE+AAFFAQT  ET+G         + WGYC ++E++P S YC+     +YPC   YYGRGP+QL WNYNY  C                 ATDPVLSF++A+WFWM       PSCHEVIT EW PS  D+ AGR PG+G+ TNII  G EC +      +NRI ++  +C    + PG NL C +Q+ F   GL+ M  +M
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGEC--GNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETFEDNGLLKMVGTM 316          
BLAST of FC872615 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.385e-55
Identity = 113/257 (43.97%), Postives = 153/257 (59.53%), Query Frame = 2
Query:   14 GGELG--KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ-PPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARS 763
            GG  G   +++ + FE +LP+R+D  CPARGFY Y AF+ AA AFPAF  +G+   R RE+AAF AQT H T+       GG Y+WGYC+       S +C  N  +PC  GK Y+ RGP+Q+ +NYNY                    ATDP ++FK+A+W WMTA+ P +PS H V+T +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC+ Q PF   +M+ S
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY--GAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          
BLAST of FC872615 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 3.115e-55
Identity = 113/257 (43.97%), Postives = 153/257 (59.53%), Query Frame = 2
Query:   14 GGELG--KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ-PPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARS 763
            GG  G   +++ + FE +LP+R+D  CPARGFY Y AF+ AA AFPAF  +G+   R RE+AAF AQT H T+       GG Y+WGYC+       S +C  N  +PC  GK Y+ RGP+Q+ +NYNY                    ATDP ++FK+A+W WMTA+ P +PS H V+T +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC+ Q PF   +M+ S
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY--GAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          
BLAST of FC872615 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.225e-51
Identity = 106/239 (44.35%), Postives = 136/239 (56.90%), Query Frame = 2
Query:   23 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 739
            +  +IS  +FE +L +R        GFYTYDAFI AAK+FPAF  +G+  +R RE+AAF AQT HETTGGW  AP G Y  G                       Y+GRGPIQ+++NYNY                     +D  + FK+A+WFWMT Q PKPS H+VIT  W PS+ D  AGR+PGYG+ TNII+GG+ECG+G    V +RIG++             NLDCY+Q+PF
Sbjct:    1 VSSVISSSLFEKMLLHR--------GFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELG-------------------STSDYFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLV--TSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYKD-----------NLDCYNQKPF 199          
BLAST of FC872615 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 7.467e-33
Identity = 87/245 (35.51%), Postives = 133/245 (54.29%), Query Frame = 2
Query:    2 GGTDGGELGKIISRE-MFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEIS-PPSPYC-NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWND-AVR-NRIGFFSTFCGKFGIQPGYNL 715
            G +    +G ++  E +F+ +  +R D  CP++GFY+Y +F+ AA++FPAFG  G+   R RE+AAF A     T+G   D     +AWG C I+  +   + +C + ++PC    KY  RGPIQLT N+NY                      DP++SFK+A+WFWM+    KPSCH+++      +AN   A R+P  G+  NII+       G +D AVR + IGF+  +C   G+  G++L
Sbjct:  122 GNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVE-NPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNY--GLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISRAF----GHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
BLAST of FC872615 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.078e-31
Identity = 85/244 (34.84%), Postives = 119/244 (48.77%), Query Frame = 2
Query:    8 TDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSP-YC---NLNYPC-RGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDC 721
            T+   +  I++ E F  L+   +D  C A+GFYT DAF+ AA  +P+FG +G+     REIAAFFA   HET               +C+I EI  PS  YC   +  +PC  GK YYGRGP+Q++WN+NY                    A  PVL+F++A+W+W        + H+                   G+G T   ING +EC      AV NR+ ++  FC +FG+ PG NL C
Sbjct:   63 TNDVSVASIVTPEFFAALVAQADD-GCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNY--GPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of FC872615 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.989e-31
Identity = 85/242 (35.12%), Postives = 111/242 (45.87%), Query Frame = 2
Query:    5 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWR-DAPGGEYAWGYCFISEISPPSPYCNLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDC 721
            G  G  +  I+S+  F+ ++  +    CP + FYT  AF+ A    P FGN G+     REIAAFFA   HETT     +   G+    YC   + +         YPC    KYYGRGP+QL+WNYNY                    ATD   SFK+A+WFWMT      + H V+                 G+G TT  ING +EC     D   +RI F+  +C  FG+ PG NL C
Sbjct:   81 GGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTNLCHIEERDGDVGDAYCDQDKAA--------QYPCAAGKKYYGRGPLQLSWNYNY--ALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT------NVHSVMNQ---------------GFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of FC872615 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.128e-31
Identity = 82/246 (33.33%), Postives = 114/246 (46.34%), Query Frame = 2
Query:    2 GGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC---NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRN-RIGFFSTFCGKFGIQPGYNLDC 721
            GG+ G  +  +++   F  +        C  + FYT  AF+ A  A+P F + G E    REIAAFFA   HET               +C+ISEI+  + YC   N  +PC    KYYGRGP+Q++WNYNY                    A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC  G N A  N R+G++  +C +  + PG NL C
Sbjct:   73 GGSGGANVANVVTDAFFNGIKNQAGS-GCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALEC-NGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of FC872615 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.530e-30
Identity = 82/248 (33.06%), Postives = 117/248 (47.18%), Query Frame = 2
Query:    2 GGTDGG--ELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN---LNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRN-RIGFFSTFCGKFGIQPGYNLDC 721
            GG+ GG   +  +++   F  +        C  + FYT  AF+ A K +P F + G++    REIAAFFA   HET               +C+ISEI+  + YC+     +PC    KYYGRGP+Q++WNYNY                    A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG G N A  N R+G++  +C + G+ PG NL C
Sbjct:   60 GGSGGGGANVASVVTSSFFNGIKNQAGS-GCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECG-GNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
The following BLAST results are available for this feature:
BLAST of FC872615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIP_TOBAC7.656e-6250.21Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI8_POPTR1.444e-6045.42Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI7_ORYSJ2.385e-5543.97Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI3.115e-5543.97Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_AVESA1.225e-5144.35Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
AGI_URTDI7.467e-3335.51Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI6_ORYSJ1.078e-3134.84Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_BETVU6.989e-3135.12Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIA_MAIZE9.128e-3133.33Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIB_MAIZE4.530e-3033.06Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BC12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872615 ID=FC872615; Name=FC872615; organism=Citrus clementina; type=EST; length=946bp
AGGGGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGT
TTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGC
TTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTT
TGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCCTTTT
TTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACCTGGT
GGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCCGTC
CCCCTACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAG
GTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAAGAC
CTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGA
TCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCACAGC
CACCAAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAAACCATCA
GCAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAA
TATAATCAACGGTGGAATTGAATGTGGCCAAGGTTGGAATGACGCTGTAC
GTAACCGTATTGGGTTCTTTAGCACTTTCTGTGGCAAGTTTGGGATTCAG
CCTGGTTACAATCTTGATTGCTACCACCAACAGCCTTTTGGCCTTATTCT
GATGGCACGATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAAGC
TTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTTGTAGGTGGA
CAACTAAGTTGTTACGCTCTTATTGTAAATAAATTAAATAAGACTGATCC
AACATGGATCAATGAGTCTTTCTCAAAAAAAAAAAAAAAAAAAAAA
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