FC872634

Overview
NameFC872634
Unique NameFC872634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length808
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_ARCFU (Translation initiation factor 2 subunit beta OS=Archaeoglobus fulgidus GN=eif2b PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.701e-16
Identity = 50/138 (36.23%), Postives = 74/138 (53.62%), Query Frame = 3
Query:  354 YEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPI 767
            YEELL R F  L + +      R R  +    + REG + T+  NF  + KT++R  DH+  +++  LGT+G +D   RLV++G+F     +  +  YV  YV+C  C SPDT   K+ R+  LRC  CG+   V  I
Sbjct:    5 YEELLERAFEKLADKD---VVRRERFEIPRVSIQREGAR-TILKNFSQIAKTLNRSEDHLYKYIVKSLGTAGFIDNG-RLVLQGKFTESELQKEVDDYVRLYVLCRECNSPDTEFIKEERVLMLRCLACGAKHPVRNI 137          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_METVS (Translation initiation factor 2 subunit beta OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.222e-16
Identity = 49/142 (34.51%), Postives = 78/142 (54.93%), Query Frame = 3
Query:  348 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPIKA 773
            ++Y+ELL R     R   PE+     R  +       EG + T+  NF D+ K M R       F++ ELGT+G ++G  RL+++G+F  +     ++ YVNEYV+C  C  PDT + K+ R+ FL+C  CG   ++ P+K+
Sbjct:    5 FDYKELLKRA----RSQLPEVVFSDVRFEIPSADSFVEGNR-TIIKNFKDIAKFMERDTHEFAKFVMKELGTAGDMEGN-RLILQGKFGWRMVNEKIQNYVNEYVLCPECGKPDTKIIKEGRIHFLKCTACG---AMKPLKS 137          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_METMP (Translation initiation factor 2 subunit beta OS=Methanococcus maripaludis GN=eif2b PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.901e-16
Identity = 48/137 (35.04%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  348 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSV 758
            ++Y  LL R     RE  PE      R  +       EG + T+  NF D+ K M R P     +++ ELGT+G ++G  RL+++G+F  +     ++ YVNEYV+C  C  PDT + K+ R+ FL+C  CG+ + V
Sbjct:    5 FDYSSLLTRA----REQLPEEVFKDVRFEIPSADSFVEGNR-TIIKNFKDIAKFMERDPQEFAKYVMKELGTAGDMEGV-RLILQGKFGWRMVNEKIQNYVNEYVLCPECGKPDTKIVKEGRIHFLKCTACGAMKPV 135          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_METM7 (Translation initiation factor 2 subunit beta OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.901e-16
Identity = 48/137 (35.04%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  348 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSV 758
            ++Y  LL R     RE  PE      R  +       EG + T+  NF D+ K M R P     +++ ELGT+G ++G  RL+++G+F  +     ++ YVNEYV+C  C  PDT + K+ R+ FL+C  CG+ + V
Sbjct:    5 FDYNSLLTRA----REQLPEEVFKDVRFEIPSADSFVEGNR-TIIKNFKDIAKFMERDPQEFAKYVMKELGTAGDMEGV-RLILQGKFGWRMVNEKIQNYVNEYVLCPECGKPDTKIVKEGRIHFLKCTACGAMKPV 135          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_METM6 (Translation initiation factor 2 subunit beta OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.901e-16
Identity = 48/137 (35.04%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  348 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSV 758
            ++Y  LL R     RE  PE      R  +       EG + T+  NF D+ K M R P     +++ ELGT+G ++G  RL+++G+F  +     ++ YVNEYV+C  C  PDT + K+ R+ FL+C  CG+ + V
Sbjct:    5 FDYNSLLTRA----REQLPEEVFKDVRFEIPSADSFVEGNR-TIIKNFKDIAKFMERDPQEFAKYVMKELGTAGDMEGV-RLILQGKFGWRMVNEKIQNYVNEYVLCPECGKPDTKIVKEGRIHFLKCTACGAMKPV 135          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_METTH (Translation initiation factor 2 subunit beta OS=Methanobacterium thermoautotrophicum GN=eif2b PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.464e-16
Identity = 49/140 (35.00%), Postives = 81/140 (57.86%), Query Frame = 3
Query:  351 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPIK 770
            +YE+LL R  + L    PE+   +R  V +   V++    +T   NF ++   ++R P H++ FLL ELGT+G+L+G  R +++G+F        +  YVN++VIC  C  PDT + ++ R+  L+CE CG   + AP+K
Sbjct:    3 DYEKLLERAIDQLP---PEVFETKRFEVPKAYSVIQGN--RTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLEGG-RAILQGKFTHFLINERIEDYVNKFVICHECNRPDTRIIREGRISLLKCEACG---AKAPLK 133          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_META3 (Translation initiation factor 2 subunit beta OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=eif2b PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.442e-16
Identity = 50/141 (35.46%), Postives = 82/141 (58.16%), Query Frame = 3
Query:  348 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPIK 770
            Y+Y+ LL R  + L E   E+  D R  V      + EG + T+  NF+D+ K + R+P     ++L ELGT+G ++G  RL+++G+F        ++++V+EYV+C  C  PDT + K+ R+ FL+C  CG   ++ PIK
Sbjct:    6 YDYDALLKRAVSQLPE---EVFKDVRFEVPHADSFV-EGNR-TMVKNFVDISKVIRREPQFFAKYVLKELGTAGDVEGP-RLILQGKFGNYIINSKIKKFVDEYVLCPECGKPDTKIIKEGRIHFLKCMACG---AMKPIK 137          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_SULSO (Translation initiation factor 2 subunit beta OS=Sulfolobus solfataricus GN=eif2b PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.456e-15
Identity = 43/139 (30.94%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  351 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPI 767
            EY E+L R+++ L E      G +  T   P  ++      T+  NF + C  + R+    M +LL EL   G++D +  LV++G+F+ +    ++ R++  YV C  CKS DTIL K+ + +++ C  CG+   V P+
Sbjct:    6 EYVEMLDRLYSKLPEK-----GRKEGTQSLPNMIILNIGNTTIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDKGELVIQGKFSSQVINTLMERFLKAYVECSTCKSLDTILKKEKKSWYIVCLACGAQTPVKPL 139          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_METM5 (Translation initiation factor 2 subunit beta OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.456e-15
Identity = 47/137 (34.31%), Postives = 73/137 (53.28%), Query Frame = 3
Query:  348 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSV 758
            ++Y  LL R     RE  PE      R  +       EG + T+  NF D+ K M R       +++ ELGT+G ++G  RL+++G+F  +     ++ YVNEYV+C  C  PDT + K+ R+ FL+C  CG+ + V
Sbjct:    5 FDYNSLLTRA----REQLPEEVFKDVRFEIPSADSFVEGNR-TIIKNFKDIAKFMERDAQEFAKYVMKELGTAGDIEGV-RLILQGKFGWRMVNEKIQNYVNEYVLCPECGKPDTKIVKEGRIHFLKCTACGAMKPV 135          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_HALSA (Translation initiation factor 2 subunit beta OS=Halobacterium salinarium GN=eif2b PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.456e-15
Identity = 49/136 (36.03%), Postives = 64/136 (47.06%), Query Frame = 3
Query:  351 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSV 758
            +YEE L R      +  P++ G   R  +  P V +EG   TV+ NF      + R  DHV+ FL  E+GTS S+D   R  + G F  +     L  YV  YV C  C  PDT L  D     L CE CG+  +V
Sbjct:    2 DYEEQLDRAM----DEKPDVTGSETRFEVPDPNVRKEGNV-TVYENFQATLDALSRTQDHVLKFLQNEVGTSASIDESGRARLTGEFGQRRVSDTLDAYVETYVTCPECGLPDTNLETDGDTIQLHCEACGARSTV 132          
The following BLAST results are available for this feature:
BLAST of FC872634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
IF2B_ARCFU1.701e-1636.23Translation initiation factor 2 subunit beta OS=Ar... [more]
IF2B_METVS2.222e-1634.51Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_METMP2.901e-1635.04Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_METM72.901e-1635.04Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_METM62.901e-1635.04Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_METTH6.464e-1635.00Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_META38.442e-1635.46Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_SULSO2.456e-1530.94Translation initiation factor 2 subunit beta OS=Su... [more]
IF2B_METM52.456e-1534.31Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_HALSA2.456e-1536.03Translation initiation factor 2 subunit beta OS=Ha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872634 ID=FC872634; Name=FC872634; organism=Citrus clementina; type=EST; length=808bp
CTATGACGGACGAAAATCAAGTAGATGTGAAGGACGAGGTGGCAGAACTT
GCCCCCTTCGATCCTACTAAAAAGAAGAAGAAGAAGAAGGTTGTAATACA
GGATCCTTCAGATGATTCTGTGGACAAACTGGCCGAGATAACTGAAACTT
CATCAGTCTCTGAGGGGCTTGAAAGTACTTTTACTGGTTTGAAAAAGAAG
AAGAAGAAACCAGTAGAAAGCAGTCTATTGAACGATGAGATTGGGGATGC
AGGAGACGATTTGGATGGTCACGTGGGTGAGGATGATGAAGCTGATGGAA
GTGGTGGTCCACGGCAGCGTTATCCATGGGAAGGGAGTGATCGCGACTAT
GAATATGAGGAGCTTCTTGGTAGGGTCTTTAACATCCTCCGAGAGAATAA
TCCTGAACTTGCAGGAGATAGGCGTAGAACAGTCATGAGACCTCCACAAG
TTCTTCGTGAAGGAACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTC
TGCAAGACCATGCATCGGCAGCCAGATCATGTCATGACATTTTTGCTTGC
TGAACTGGGGACAAGTGGGTCACTGGACGGACAGCAAAGACTGGTCGTGA
AGGGCCGATTTGCTCCCAAGAATTTTGAAGGGATACTGCGTCGATATGTC
AATGAATATGTCATCTGTCTTGGGTGCAAAAGTCCTGACACGATACTTTC
AAAGGATAACCGCCTCTTCTTTCTCAGATGTGAGAAGTGTGGTTCTGGAC
GATCAGTTGCTCCCATCAAAGCTGGTTTCCAGGCACGTGTTGGTCGTAGA
AATGCTGG
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