FC872634

Overview
NameFC872634
Unique NameFC872634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length808
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_HALS3 (Translation initiation factor 2 subunit beta OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.456e-15
Identity = 49/136 (36.03%), Postives = 64/136 (47.06%), Query Frame = 3
Query:  351 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSV 758
            +YEE L R      +  P++ G   R  +  P V +EG   TV+ NF      + R  DHV+ FL  E+GTS S+D   R  + G F  +     L  YV  YV C  C  PDT L  D     L CE CG+  +V
Sbjct:    2 DYEEQLDRAM----DEKPDVTGSETRFEVPDPNVRKEGNV-TVYENFQATLDALSRTQDHVLKFLQNEVGTSASIDESGRARLTGEFGQRRVSDTLDAYVETYVTCPECGLPDTNLETDGDTIQLHCEACGARSTV 132          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_PICTO (Translation initiation factor 2 subunit beta OS=Picrophilus torridus GN=eif2b PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.208e-15
Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 3
Query:  345 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGS 746
            +++Y +LL R   +L         +  R  +  P V+ EG K T+  NF+D+ + M+R P+ V+ +L  E G    L GQ RL++  + +    +  +  Y+  YVIC  CKSPDT + K  R + L C+ CG+
Sbjct:    2 NFDYNKLLERASGVLSSKTK----NESRLKIPEPDVIYEG-KSTIIRNFIDITEMMNRDPEDVIKYLTKEFGIGAVLSGQ-RLIINRKVSEDEIQSKMNEYMATYVICYECKSPDTEIQKIGRTYLLVCKACGA 129          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_THEPD (Translation initiation factor 2 subunit beta OS=Thermofilum pendens (strain Hrk 5) GN=eif2b PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.472e-15
Identity = 46/139 (33.09%), Postives = 78/139 (56.12%), Query Frame = 3
Query:  354 YEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPIK 770
            YEELL R +++L        G+R   V+   +V + G KK    NF D+ + ++R+P  ++ F+L E+   G  +     V+ G  + +    +L R+ NEYV C  C++PDTIL K+ +L +++C  CG   +V+P+K
Sbjct:    8 YEELLERAYSMLPRRRRRSTGER--FVLPTFEVSKTG-KKVYIHNFKDVAEKLNREPPVLLRFILKEIALPGVYENGTA-VIHGEVSAQTLNKLLERFYNEYVKCPVCEAPDTILVKEKKLMYIKCTACG---AVSPVK 139          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_SULTO (Translation initiation factor 2 subunit beta OS=Sulfolobus tokodaii GN=eif2b PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.334e-15
Identity = 41/139 (29.50%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  351 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPI 767
            EY +LL R+++ L E   +++G        P  ++      T+  NF + C  + R+      F+L EL   G++D   +LV++G+F+  +   I+ R++  YV C  CKS DT+L K+ + +++ C  CG+   V P+
Sbjct:    6 EYIKLLDRLYSKLPERVQKVSGQSL-----PNLIILSIGNNTIIKNFSEYCDRIRREDKLCAKFILKELAAPGNVDENGQLVIQGKFSSASINKIMERFIKTYVQCSTCKSLDTVLIKEKKAWYISCLACGAKTPVKPL 139          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_METJA (Translation initiation factor 2 subunit beta OS=Methanocaldococcus jannaschii GN=eif2b PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.219e-14
Identity = 45/140 (32.14%), Postives = 78/140 (55.71%), Query Frame = 3
Query:  348 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPI 767
            Y+Y+ LL R     R   P+    + R  +   ++L EG + T+  NF +L K ++R  +    +LL E G++G+L+G  RL+++ R +P+  +  +  ++ EYVIC  C  PDT + K+ R+  L+C  CG+ R +  I
Sbjct:   10 YDYKALLKRA----RSQIPDYVFQKDRFELPEIEILIEGNR-TIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLEGG-RLILQRRISPELLKSRINDFLREYVICRECGKPDTKIIKEGRVHLLKCMACGAIRPIRMI 143          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_SULIY (Translation initiation factor 2 subunit beta OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14
Identity = 41/139 (29.50%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  351 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPI 767
            EY E+L R+++ L E      G +  T   P  ++      T+  NF + C  + R+    M +LL EL   G++D +  L+++G+F+ +    ++ R++  YV C  CKS DT+L K+ + +++ C  CG+   V P+
Sbjct:    6 EYVEMLDRLYSKLPEK-----GRKEGTQALPNLIIFNIGNTTMIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDKGELIIQGKFSSQVINTLMERFLKAYVECSTCKSLDTVLKKEKKSWYIVCLACGAQTPVKPL 139          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_SULIN (Translation initiation factor 2 subunit beta OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14
Identity = 41/139 (29.50%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  351 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPI 767
            EY E+L R+++ L E      G +  T   P  ++      T+  NF + C  + R+    M +LL EL   G++D +  L+++G+F+ +    ++ R++  YV C  CKS DT+L K+ + +++ C  CG+   V P+
Sbjct:    6 EYVEMLDRLYSKLPEK-----GRKEGTQALPNLIIFNIGNTTMIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDKGELIIQGKFSSQVINTLMERFLKAYVECSTCKSLDTVLKKEKKSWYIVCLACGAQTPVKPL 139          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_SULIM (Translation initiation factor 2 subunit beta OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14
Identity = 41/139 (29.50%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  351 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPI 767
            EY E+L R+++ L E      G +  T   P  ++      T+  NF + C  + R+    M +LL EL   G++D +  L+++G+F+ +    ++ R++  YV C  CKS DT+L K+ + +++ C  CG+   V P+
Sbjct:    6 EYVEMLDRLYSKLPEK-----GRKEGTQALPNLIIFNIGNTTMIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDKGELIIQGKFSSQVINTLMERFLKAYVECSTCKSLDTVLKKEKKSWYIVCLACGAQTPVKPL 139          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_SULIL (Translation initiation factor 2 subunit beta OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14
Identity = 41/139 (29.50%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  351 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPI 767
            EY E+L R+++ L E      G +  T   P  ++      T+  NF + C  + R+    M +LL EL   G++D +  L+++G+F+ +    ++ R++  YV C  CKS DT+L K+ + +++ C  CG+   V P+
Sbjct:    6 EYVEMLDRLYSKLPEK-----GRKEGTQALPNLIIFNIGNTTMIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDKGELIIQGKFSSQVINTLMERFLKAYVECSTCKSLDTVLKKEKKSWYIVCLACGAQTPVKPL 139          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_SULIK (Translation initiation factor 2 subunit beta OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14
Identity = 41/139 (29.50%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  351 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPI 767
            EY E+L R+++ L E      G +  T   P  ++      T+  NF + C  + R+    M +LL EL   G++D +  L+++G+F+ +    ++ R++  YV C  CKS DT+L K+ + +++ C  CG+   V P+
Sbjct:    6 EYVEMLDRLYSKLPEK-----GRKEGTQALPNLIIFNIGNTTMIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDKGELIIQGKFSSQVINTLMERFLKAYVECSTCKSLDTVLKKEKKSWYIVCLACGAQTPVKPL 139          
The following BLAST results are available for this feature:
BLAST of FC872634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
IF2B_HALS32.456e-1536.03Translation initiation factor 2 subunit beta OS=Ha... [more]
IF2B_PICTO3.208e-1532.84Translation initiation factor 2 subunit beta OS=Pi... [more]
IF2B_THEPD5.472e-1533.09Translation initiation factor 2 subunit beta OS=Th... [more]
IF2B_SULTO9.334e-1529.50Translation initiation factor 2 subunit beta OS=Su... [more]
IF2B_METJA1.219e-1432.14Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_SULIY1.592e-1429.50Translation initiation factor 2 subunit beta OS=Su... [more]
IF2B_SULIN1.592e-1429.50Translation initiation factor 2 subunit beta OS=Su... [more]
IF2B_SULIM1.592e-1429.50Translation initiation factor 2 subunit beta OS=Su... [more]
IF2B_SULIL1.592e-1429.50Translation initiation factor 2 subunit beta OS=Su... [more]
IF2B_SULIK1.592e-1429.50Translation initiation factor 2 subunit beta OS=Su... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872634 ID=FC872634; Name=FC872634; organism=Citrus clementina; type=EST; length=808bp
CTATGACGGACGAAAATCAAGTAGATGTGAAGGACGAGGTGGCAGAACTT
GCCCCCTTCGATCCTACTAAAAAGAAGAAGAAGAAGAAGGTTGTAATACA
GGATCCTTCAGATGATTCTGTGGACAAACTGGCCGAGATAACTGAAACTT
CATCAGTCTCTGAGGGGCTTGAAAGTACTTTTACTGGTTTGAAAAAGAAG
AAGAAGAAACCAGTAGAAAGCAGTCTATTGAACGATGAGATTGGGGATGC
AGGAGACGATTTGGATGGTCACGTGGGTGAGGATGATGAAGCTGATGGAA
GTGGTGGTCCACGGCAGCGTTATCCATGGGAAGGGAGTGATCGCGACTAT
GAATATGAGGAGCTTCTTGGTAGGGTCTTTAACATCCTCCGAGAGAATAA
TCCTGAACTTGCAGGAGATAGGCGTAGAACAGTCATGAGACCTCCACAAG
TTCTTCGTGAAGGAACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTC
TGCAAGACCATGCATCGGCAGCCAGATCATGTCATGACATTTTTGCTTGC
TGAACTGGGGACAAGTGGGTCACTGGACGGACAGCAAAGACTGGTCGTGA
AGGGCCGATTTGCTCCCAAGAATTTTGAAGGGATACTGCGTCGATATGTC
AATGAATATGTCATCTGTCTTGGGTGCAAAAGTCCTGACACGATACTTTC
AAAGGATAACCGCCTCTTCTTTCTCAGATGTGAGAAGTGTGGTTCTGGAC
GATCAGTTGCTCCCATCAAAGCTGGTTTCCAGGCACGTGTTGGTCGTAGA
AATGCTGG
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