FC872634

Overview
NameFC872634
Unique NameFC872634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length808
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_SULIA (Translation initiation factor 2 subunit beta OS=Sulfolobus islandicus (strain M.16.27) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14
Identity = 41/139 (29.50%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  351 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPI 767
            EY E+L R+++ L E      G +  T   P  ++      T+  NF + C  + R+    M +LL EL   G++D +  L+++G+F+ +    ++ R++  YV C  CKS DT+L K+ + +++ C  CG+   V P+
Sbjct:    6 EYVEMLDRLYSKLPEK-----GRKEGTQALPNLIIFNIGNTTMIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDKGELIIQGKFSSQVINTLMERFLKAYVECSTCKSLDTVLKKEKKSWYIVCLACGAQTPVKPL 139          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_THEAC (Translation initiation factor 2 subunit beta OS=Thermoplasma acidophilum GN=eif2b PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.716e-14
Identity = 42/140 (30.00%), Postives = 75/140 (53.57%), Query Frame = 3
Query:  351 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPIK 770
            +YE+LL +  N+L  +   +     R  +  P+++REG K T+  NF D+   ++R P+H++ FL  E GT+   +G+ RL++  +   +     +  Y+N YV C  C S DT + K  R+  L C+ CG+   +  ++
Sbjct:    4 DYEKLLEKAKNVLSSSTKNID----RLKIPDPEIIREG-KATIIRNFQDIVDIINRDPEHIIKFLTREFGTNIVQNGR-RLIINRKLTLEELLDKMNEYINTYVRCYECGSLDTEIQKSGRISLLVCKACGAQHPIHSVR 137          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_THEVO (Translation initiation factor 2 subunit beta OS=Thermoplasma volcanium GN=eif2b PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.901e-14
Identity = 43/139 (30.94%), Postives = 75/139 (53.96%), Query Frame = 3
Query:  354 YEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPIK 770
            Y++LL +  ++L  +   +     R  +  P+++REG K T+  NF D+   ++R PD V+ FL  ELGT+   +G+ RL++  +   +  +  +  Y+N YV C  C S DT + K  R+  L C+ CG+   +  +K
Sbjct:    5 YDKLLEKAKDVLSSSTKNID----RLKIPEPEIIREG-KATIIRNFQDIIDIINRDPDQVIKFLTRELGTNIVQNGR-RLIINKKVTLEELQEKMNEYINTYVRCYECGSLDTEIQKSGRVSLLVCKACGAQHPIHTVK 137          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_METS5 (Translation initiation factor 2 subunit beta OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=eif2b PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.032e-13
Identity = 44/144 (30.56%), Postives = 76/144 (52.78%), Query Frame = 3
Query:  336 SDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPI 767
            S+RD  Y  LL R++  L +   +LA +   T   P   +      T+  NF + C  + R+    M +LL EL  +GS+    +L+++G+F+       + R++  YV C  CKS DT+L KD ++++++C  CG+   V P+
Sbjct:    2 SERDKLYHVLLDRLYAKLPKK--DLASE---TQTLPTLSIINVGNTTIIRNFSEYCDRIRREDKICMRYLLKELAAAGSISENGQLMIQGKFSNAIVNTFMDRFLKTYVQCSTCKSLDTVLVKDKKIWYIQCLACGAKNPVKPL 140          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_SULAC (Translation initiation factor 2 subunit beta OS=Sulfolobus acidocaldarius GN=eif2b PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.141e-12
Identity = 40/134 (29.85%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  345 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGS 746
            D  YE+LL R+++ L +   + +G +      P  ++ +    T+  NF + C  + R+    M +LL EL   GSL    +LV++G+F+ +    ++ R++  YV C  C+S DTIL +D +++ + C  CG+
Sbjct:    6 DKNYEQLLDRLYDRLPDK-AQKSGQQNL----PNLIVLQVGNTTIIRNFSEYCDRIRREDKLCMRYLLKELAAPGSLGENGQLVIQGKFSSQVVTMLMERFLKMYVQCSTCRSFDTILKRDKKVWIISCLACGA 134          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_PYRAE (Translation initiation factor 2 subunit beta OS=Pyrobaculum aerophilum GN=eif2b PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.946e-12
Identity = 43/141 (30.50%), Postives = 67/141 (47.52%), Query Frame = 3
Query:  345 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPI 767
            D EY  LL R + ++       A   +R    P   +    +KT+  NF  + K ++R    +  F   EL   G+L+G     + G  +PK  E +  R++  YV+C  C S DT L K+ R+F +RC  CG+   V P+
Sbjct:    2 DSEYAALLERAYKLV-------APKAQRRAEIPKIEVENMPRKTIIPNFGQIAKRLNRDVYFMAKFFQKELAVPGTLEGDV-FTLHGEKSPKVVEAVYDRFIRYYVVCPVCNSIDTELRKEGRIFIMRCLACGASTPVRPL 134          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_STAMF (Translation initiation factor 2 subunit beta OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eif2b PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.336e-12
Identity = 41/135 (30.37%), Postives = 72/135 (53.33%), Query Frame = 3
Query:  342 RDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGS 746
            RDY++EELL R ++ L    P     +    +   +V+  G K T+ +NF  +   ++R P  +  + + ELG    ++   +L+++GRF+      ++  +V +YVIC  C S  T L K  ++F L+CE CG+
Sbjct:    6 RDYKFEELLERAYSKL----PARTVSKETFEVPRAEVMFVGGK-TLILNFKQITDVINRDPKILQRYFVKELGVPAYMNESGQLILQGRFSSHVINRLIDLFVKKYVICPTCGSRFTKLIKKGKVFILKCEACGA 135          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_THENV (Translation initiation factor 2 subunit beta OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.648e-11
Identity = 41/141 (29.08%), Postives = 68/141 (48.23%), Query Frame = 3
Query:  345 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPI 767
            D EY  LL R + ++       A   +R    P   ++   +KTV  NF  + K ++R    +  F   EL   G+++G     + G  +PK  E +  R++  YV+C  C S DT L ++ R++ +RC  CG+   V P+
Sbjct:    2 DEEYIALLDRAYKLV-------APKAQRRAEIPKIEVQNMPRKTVIPNFGQIAKRLNRDIYFMAKFFQRELAVPGTVEGDV-FTLHGEKSPKVVEAVYERFIRYYVVCPVCNSIDTELRREGRIYVMRCLACGASTPVKPL 134          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_PYRIL (Translation initiation factor 2 subunit beta OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.810e-11
Identity = 39/141 (27.66%), Postives = 68/141 (48.23%), Query Frame = 3
Query:  345 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPI 767
            D EY  LL R + ++       A   +R    P   ++   +KT+  NF  + K ++R    +  F   EL   G+++G     + G  +PK  E +  R++  YV+C  C S DT L ++ R++ ++C  CG+   V P+
Sbjct:    2 DEEYLALLERAYKLV-------APKAQRRAEIPKIEVQNMPRKTIIPNFGQIAKRLNRDVYFMAKFFQKELAVPGTIEGDV-FTLHGEKSPKVVEAVYERFIRYYVVCPVCNSIDTELKREGRIYVMKCLACGASTPVRPL 134          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_PYRAR (Translation initiation factor 2 subunit beta OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.810e-11
Identity = 43/141 (30.50%), Postives = 69/141 (48.94%), Query Frame = 3
Query:  345 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPI 767
            D EY  LL R + ++          +RRT +   QV     +KT+  NF  + K ++R    +  F   EL   G+++G     + G  +PK  E +  R++  YV+C  C S DT L K+ R+F ++C  CG+   V P+
Sbjct:    2 DKEYLALLERAYTLVAPKA------QRRTEIPKIQV-ENMPRKTIIPNFGAIAKRLNRDIYFMAKFFQKELAVPGTVEGDV-FTLHGEKSPKVVEAVYERFIRYYVVCPVCNSIDTELRKEGRVFVMKCLACGASTPVKPL 134          
The following BLAST results are available for this feature:
BLAST of FC872634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
IF2B_SULIA1.592e-1429.50Translation initiation factor 2 subunit beta OS=Su... [more]
IF2B_THEAC2.716e-1430.00Translation initiation factor 2 subunit beta OS=Th... [more]
IF2B_THEVO7.901e-1430.94Translation initiation factor 2 subunit beta OS=Th... [more]
IF2B_METS51.032e-1330.56Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_SULAC1.141e-1229.85Translation initiation factor 2 subunit beta OS=Su... [more]
IF2B_PYRAE1.946e-1230.50Translation initiation factor 2 subunit beta OS=Py... [more]
IF2B_STAMF4.336e-1230.37Translation initiation factor 2 subunit beta OS=St... [more]
IF2B_THENV1.648e-1129.08Translation initiation factor 2 subunit beta OS=Th... [more]
IF2B_PYRIL2.810e-1127.66Translation initiation factor 2 subunit beta OS=Py... [more]
IF2B_PYRAR2.810e-1130.50Translation initiation factor 2 subunit beta OS=Py... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872634 ID=FC872634; Name=FC872634; organism=Citrus clementina; type=EST; length=808bp
CTATGACGGACGAAAATCAAGTAGATGTGAAGGACGAGGTGGCAGAACTT
GCCCCCTTCGATCCTACTAAAAAGAAGAAGAAGAAGAAGGTTGTAATACA
GGATCCTTCAGATGATTCTGTGGACAAACTGGCCGAGATAACTGAAACTT
CATCAGTCTCTGAGGGGCTTGAAAGTACTTTTACTGGTTTGAAAAAGAAG
AAGAAGAAACCAGTAGAAAGCAGTCTATTGAACGATGAGATTGGGGATGC
AGGAGACGATTTGGATGGTCACGTGGGTGAGGATGATGAAGCTGATGGAA
GTGGTGGTCCACGGCAGCGTTATCCATGGGAAGGGAGTGATCGCGACTAT
GAATATGAGGAGCTTCTTGGTAGGGTCTTTAACATCCTCCGAGAGAATAA
TCCTGAACTTGCAGGAGATAGGCGTAGAACAGTCATGAGACCTCCACAAG
TTCTTCGTGAAGGAACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTC
TGCAAGACCATGCATCGGCAGCCAGATCATGTCATGACATTTTTGCTTGC
TGAACTGGGGACAAGTGGGTCACTGGACGGACAGCAAAGACTGGTCGTGA
AGGGCCGATTTGCTCCCAAGAATTTTGAAGGGATACTGCGTCGATATGTC
AATGAATATGTCATCTGTCTTGGGTGCAAAAGTCCTGACACGATACTTTC
AAAGGATAACCGCCTCTTCTTTCTCAGATGTGAGAAGTGTGGTTCTGGAC
GATCAGTTGCTCCCATCAAAGCTGGTTTCCAGGCACGTGTTGGTCGTAGA
AATGCTGG
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