FC872634

Overview
NameFC872634
Unique NameFC872634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length808
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_PYRCJ (Translation initiation factor 2 subunit beta OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 41/141 (29.08%), Postives = 66/141 (46.81%), Query Frame = 3 
Query:  345 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPI 767
            D EY  LL R + ++       A   +  V+  P       +KT+  NF  + K ++R    +  F   EL   G+++G     + G  +PK  E +  R++  YV+C  C S DT L ++ R+F L C  CG+   V P+
Sbjct:    2 DDEYLALLDRAYKLVSPKAQRRAEIPKIEVVNMP-------RKTIIQNFGAIAKRLNRDVYLMAKFFQKELAVPGTVEGDV-FTLHGEKSPKVVEAVYERFIKYYVVCPVCNSIDTELRREGRIFVLHCLACGASTPVRPL 134
The following BLAST results are available for this feature:
BLAST of FC872634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
IF2B_PYRCJ8.177e-1129.08Translation initiation factor 2 subunit beta OS=Py... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872634 ID=FC872634; Name=FC872634; organism=Citrus clementina; type=EST; length=808bp
CTATGACGGACGAAAATCAAGTAGATGTGAAGGACGAGGTGGCAGAACTT
GCCCCCTTCGATCCTACTAAAAAGAAGAAGAAGAAGAAGGTTGTAATACA
GGATCCTTCAGATGATTCTGTGGACAAACTGGCCGAGATAACTGAAACTT
CATCAGTCTCTGAGGGGCTTGAAAGTACTTTTACTGGTTTGAAAAAGAAG
AAGAAGAAACCAGTAGAAAGCAGTCTATTGAACGATGAGATTGGGGATGC
AGGAGACGATTTGGATGGTCACGTGGGTGAGGATGATGAAGCTGATGGAA
GTGGTGGTCCACGGCAGCGTTATCCATGGGAAGGGAGTGATCGCGACTAT
GAATATGAGGAGCTTCTTGGTAGGGTCTTTAACATCCTCCGAGAGAATAA
TCCTGAACTTGCAGGAGATAGGCGTAGAACAGTCATGAGACCTCCACAAG
TTCTTCGTGAAGGAACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTC
TGCAAGACCATGCATCGGCAGCCAGATCATGTCATGACATTTTTGCTTGC
TGAACTGGGGACAAGTGGGTCACTGGACGGACAGCAAAGACTGGTCGTGA
AGGGCCGATTTGCTCCCAAGAATTTTGAAGGGATACTGCGTCGATATGTC
AATGAATATGTCATCTGTCTTGGGTGCAAAAGTCCTGACACGATACTTTC
AAAGGATAACCGCCTCTTCTTTCTCAGATGTGAGAAGTGTGGTTCTGGAC
GATCAGTTGCTCCCATCAAAGCTGGTTTCCAGGCACGTGTTGGTCGTAGA
AATGCTGG
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