FC872636

Overview
NameFC872636
Unique NameFC872636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length864
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 9.079e-19
Identity = 71/214 (33.18%), Postives = 105/214 (49.07%), Query Frame = 3
Query:  246 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKG------DGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            RA ++EFVAT +F++    +V G+ K      T+G +  +A A    + A V  +   SGGH+NPAVTFG+ + R++S   A  Y   Q LGA+    +++        +  GG  M   G++ G        L  E+V TF LVYTV+ +A D +    D     +APL IG       LA  P  G  +NP+R+ G AL+      W   W+
Sbjct:   29 RAALSEFVATAVFVFAAEGSVYGLWKMYRDTGTLGGLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLLR--------LASGG--MRPMGFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGGGD-----IAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALV---GWNWRHHWV 224          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.549e-18
Identity = 73/222 (32.88%), Postives = 110/222 (49.55%), Query Frame = 3
Query:  207 LFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            ++ PG L      +A +AEF++T +F++    + M  SK     +T   G+   A A    +F  V   A ISGGH+NPAVTFG F+   ++L   + Y I Q LG+     +++         L  G   L+ G S  + L  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V    L      G  +NP+ S G AL+     +W+  W+
Sbjct:   14 VYHPGAL------KAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGG----LATGTFGLT-GVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS----LGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALV---SWSWESQWV 217          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQPZ_RHOPA (Aquaporin Z OS=Rhodopseudomonas palustris GN=aqpZ PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.549e-18
Identity = 60/175 (34.29%), Postives = 90/175 (51.43%), Query Frame = 3
Query:  345 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANM-LSKGYSKGDGLGA--------------EIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAAL 824
            +G+ G++ AFG  +  + Y    ISG H+NPAVT GL    +  +     Y+I Q LGAI  AA++       Y +  G A   L+KG++  +G GA              E+V T + ++ +  +T  K  A        APL IG A+ ++HL +IP+T T +NP+RS G AL
Sbjct:   35 IGLVGVSLAFGLSVVTMAYAIGHISGCHLNPAVTLGLAAGGRFPVKQIAPYIIAQVLGAIAAAALL-------YLIASGAAGFDLAKGFA-SNGYGAHSPGQYNLVACFVMEVVMTMMFLFVIMGSTHGKAPAG------FAPLAIGLALVMIHLVSIPVTNTSVNPARSTGPAL 195          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.023e-18
Identity = 69/209 (33.01%), Postives = 105/209 (50.24%), Query Frame = 3
Query:  246 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            RA +AEF++T +F++    + +  +K     +T   G+   A A    +F  V   A ISGGH+NPAVTFG+ L   ++L   + Y I Q LG++  A  +  F      +   G   LS G    + L  EIV TF LVYTV+ +A D K  +    +  +AP+ IGF V    LA    +G  +NP+ + G A++      W + W+
Sbjct:   22 RAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSV-AACFLLSFATGGEPIPAFG---LSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGS----LGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVV---SWTWTNHWV 219          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.450e-18
Identity = 66/214 (30.84%), Postives = 101/214 (47.20%), Query Frame = 3
Query:  222 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            E+ +  F+R+ I+E +A+F++++I      GV    S  S   +   A A G  +  L  C   ISG HINPAVT  L + R +S   A  Y+  QC G I GAA++ G     Y+     A   S   +  +  G E + TF++V   F +TD  +    +     +   IG A       ++P     +NP+RSLG + + NK   WD  W+
Sbjct:   58 EIRTLEFWRSIISECLASFMYVFIVCGAAAGVGVGASVSSV--LLATALASGLAMATLTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALLYGVTVPGYQGNLQAAISHSAALAAWERFGVEFILTFLVVLCYFVSTDPMKKFMGN-----SAASIGCAYSACCFVSMPY----LNPARSLGPSFVLNK---WDSHWV 257          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQPZ_SYNY3 (Aquaporin Z OS=Synechocystis sp. (strain PCC 6803) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.885e-18
Identity = 66/218 (30.28%), Postives = 96/218 (44.04%), Query Frame = 3
Query:  255 IAEFVATFLFLY------ITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLS---------KGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            IAEF+ TF  +       +    +       +    +G  G+A AFG  +F   Y    ISGGH NPAV+FGL++ ++   +    Y+  Q LGAI  +  +    +        G+N L+         +GY     L  E V TF+ +  +   TD    A        AP  IG A+ L+HL +IPIT T +NP+RS G AL           W+
Sbjct:    5 IAEFIGTFWLVLGGCGSAVFAAFIAAPGGGNTNEFGLGYLGVALAFGLTVFTGAYALGHISGGHFNPAVSFGLWMGKRFPGSQLAPYIGAQVLGAIVASLFIFIVAQGGPNFSLDGSNPLATNGFGDHSPQGYGFLAALLIEFVLTFIFLIVILGVTDKTAPAG------FAPAAIGLALTLIHLISIPITNTSVNPARSTGVALFCGNPALIGQLWL 216          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.686e-18
Identity = 67/207 (32.37%), Postives = 101/207 (48.79%), Query Frame = 3
Query:  246 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSA-TDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            +A I EF+ TFLF++  V + M         + VG+  +A A    + A++     ISGGH+NPAVT GL L   +S+  A  Y I Q L +     ++          +G   + L+ G S   G+  EI+ TF L++TV++   D K+ + D   P+L     GF V    LA    +G  +NP+RS G AL+      W D W+
Sbjct:   19 KALIVEFITTFLFVFAGVGSAMATDSLVGN-TLVGLFAVAVAHA-FVVAVMISAGHISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAACFLLSYLTGG----MGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLT----GFVVGANILAGGAFSGASMNPARSFGPALVSGN---WTDHWV 212          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 1.004e-17
Identity = 72/226 (31.86%), Postives = 104/226 (46.02%), Query Frame = 3
Query:  246 RAGIAEFVATFLFLYI----TVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQ--------YEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNA----RDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALI----YNKDQAWDDPWI 863
            RA  AEF +TFLF++I    T+   M      S  S++    +A AFG  +FA V+  A +SGGH+NPAVTF   +   +++ +A+FY   Q LG+     V+      Q         EM G GA +L            E V TF++VYTV  A D +       +      L  L +G       LA   +TG  +NP+RS G A++     N+   W  P +
Sbjct:   18 RAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFG--LFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTFACLVLHYISAGQAVPTTRIAVEMTGFGAGIL------------EGVLTFMVVYTVHVAGDPRGGGFGGRKGPAATALGALVVGAVTGACVLAAGSLTGASMNPARSFGPAVVSGHYSNQAVYWAGPMV 229          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBVU (Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.004e-17
Identity = 57/181 (31.49%), Postives = 86/181 (47.51%), Query Frame = 3
Query:  345 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVV-------KGFQKSQYEMLGGGANMLSK-GYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            +G+ G++ AFG  +  + +    ISG H+NPAVT GL+   +      V Y++ Q +G +    V+        GF  +       G    S  GYS    L  E+V T + +  +  ATD +           AP+ IG  + L+HL +IP+T T +NP+RS G AL Y  D A    W+
Sbjct:   33 IGLLGVSLAFGLTVLTMAFAIGHISGCHLNPAVTIGLWAGGRFEAKEIVPYILAQVIGGVIAGGVLYTIASGQMGFDATSSGFASNGYGEHSPGGYSLTSALVTEVVMTMMFLLVILGATDQRAPQG------FAPIAIGLCLTLIHLISIPVTNTSVNPARSTGVAL-YVGDWATAQLWL 206          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.921e-17
Identity = 71/222 (31.98%), Postives = 104/222 (46.85%), Query Frame = 3
Query:  207 LFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            ++ PG L      +A  AEF++T +F++    + M  SK      T   G+   A A    +F  V   A ISGGH+NPAVTFG F+   ++L   + Y + Q LG+     +++     Q     G       G S  + L  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V    L      G  +NP+ S G AL+      W   W+
Sbjct:   14 VYHPGAL------KAAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTGGQATGTFG-----LTGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS----LGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALV---SWEWGYQWV 217          
The following BLAST results are available for this feature:
BLAST of FC872636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
TIP32_ORYSJ9.079e-1933.18Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP11_ORYSJ1.549e-1832.88Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
AQPZ_RHOPA1.549e-1834.29Aquaporin Z OS=Rhodopseudomonas palustris GN=aqpZ ... [more]
TIP12_ARATH2.023e-1833.01Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
BIB_DROME3.450e-1830.84Neurogenic protein big brain OS=Drosophila melanog... [more]
AQPZ_SYNY35.885e-1830.28Aquaporin Z OS=Synechocystis sp. (strain PCC 6803)... [more]
TIP41_ARATH7.686e-1832.37Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP51_ORYSJ1.004e-1731.86Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
AQPZ_VIBVU1.004e-1731.49Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1[more]
TIP11_MAIZE2.921e-1731.98Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872636 ID=FC872636; Name=FC872636; organism=Citrus clementina; type=EST; length=864bp
GGGGGAGCCCGTTGTGCCATTTATTTATTCTATTCACTCCCAAGAAACTT
GAACCTATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGA
AGAGGATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTG
GAACCGCGGCTCAAACTCAGGATGTGAAGGATTACACGGAGCCACCTCCG
GCGCCGCTCTTCGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGC
TGGCATTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTC
TAACAGTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGA
ATCCAGGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTA
CTGCACTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCG
GGCTGTTCTTGGCCCGAAAGCTGTCGCTTACCACGGCAGTTTTTTACATG
ATAATGCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCTT
TCAGAAAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCA
AAGGCTACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTTGGTACCTTT
GTTCTTGTTTACACTGTCTTCTCGGCCACTGATGCCAAGCGCAATGCCCG
CGATTCTCATGTTCCTATATTGGCACCCCTGCCCATAGGATTTGCTGTGT
TTTTGGTGCACTTGGCAACAATTCCTATCACAGGAACAGGCATTAACCCA
TCTAGGAGTCTTGGCGCAGCTCTGATATACAACAAGGACCAAGCCTGGGA
TGATCCTTGGATTT
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