FC872636

Overview
NameFC872636
Unique NameFC872636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length864
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQPM_ARCFU (Probable aquaporin aqpM OS=Archaeoglobus fulgidus GN=aqpM PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.231e-12
Identity = 60/204 (29.41%), Postives = 87/204 (42.65%), Query Frame = 3
Query:  258 AEFVATFLFLY-------ITVLTVMGVSKSKSKCSTVGIQG-------IAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAAL 824
            AE V TF+ ++       IT++   G  K       +G  G       I  AF   I A++Y    ISG HINPAVT  L+   +      V Y++ Q +GA  G+ +           +GG GA     G   G  +  E +GTF+L+  +      +R       P  A L IG  V  +      ITG+ +NP+R+ G  L
Sbjct:   11 AEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAP-----PGFAGLVIGLTVGGIITTIGNITGSSLNPARTFGPYL 209          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: NIP31_MAIZE (Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.075e-11
Identity = 58/199 (29.15%), Postives = 86/199 (43.22%), Query Frame = 3
Query:  258 AEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIY-NKDQAW 848
            AEFV TF+ ++      +   K     S  G    A   G  +  ++  T  ISG H+NP++T      R         Y+ +Q L ++C A  +KG     +  L GG  +     S       E + +F L++ V + ATD +       V  LA + +G AV L  L   P TG  +NP R+LG A+   N  Q W
Sbjct:   78 AEFVGTFILIFFATAAPIVNQKYGGAISPFGNAACA---GLAVATVILSTGHISGAHLNPSLTIAFAALRHFPWLQVPAYVAVQALASVCAAFALKGV---FHPFLSGGVTVPDATVSTAQAFFTEFIISFNLLFVVTAVATDTRA------VGELAGIAVGAAVTLNILVAGPTTGGSMNPVRTLGPAVAAGNYRQLW 264          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: GLPF_STRPN (Glycerol uptake facilitator protein OS=Streptococcus pneumoniae GN=glpF PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.075e-11
Identity = 61/215 (28.37%), Postives = 99/215 (46.05%), Query Frame = 3
Query:  261 EFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKG-------DGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIY------NK-DQAWDDPWI 863
            EF+ T + + +    V GV   K+K ++ G   I   +G  +   V+ +  +S  ++NPAVT G+ L   L   + + Y++ Q  GA+ G  +V    K  YE      N+L+  +S G         L +EI+GTFVLV T+F+       A       +    +G  +  + L+    TG  +NP+R LG  +++      NK D  W   WI
Sbjct:    8 EFLGTLILILLGNGVVAGVVLPKTKSNSSGWIVITMGWGIAVAVAVFVSGKLSPAYLNPAVTIGVALKGGLPWASVLPYILAQFAGAMLGQILVWLQFKPHYEAEENAGNILAT-FSTGPAIKDTVSNLISEILGTFVLVLTIFALGLYDFQAG------IGTFAVGTLIVGIGLSLGGTTGYALNPARDLGPRIMHSILPIPNKGDGDWSYAWI 215          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: GLPF_HAEIN (Glycerol uptake facilitator protein OS=Haemophilus influenzae GN=glpF PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.075e-11
Identity = 60/205 (29.27%), Postives = 90/205 (43.90%), Query Frame = 3
Query:  255 IAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAA------------------VVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLG 815
            I EF+ T L ++  V  V  +   K   ++ G+  I+  +G  +   VY TAG+SG H+NPAVT  L+          + Y+I Q LGA   AA                  +V+G Q+S   + G  +       S G     E V T +L+  + + TD            LAPL IG  + ++  A  P+TG  +NP+R  G
Sbjct:   10 IGEFLGTALLIFFGVGCVAAL---KVAGASFGLWEISIMWGMGVALAVYATAGLSGAHLNPAVTIALWKFACFDGKKVIPYIISQMLGAFFAAALVYALYRNVFIDYETVHNIVRGTQES-LSLAGTFSTYPHPSLSIGGAFAVEFVITAILMALIMALTDDGNGVPRGP---LAPLLIGILIAVIGGAMGPLTGFAMNPARDFG 207          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: GLPF_THEMA (Probable glycerol uptake facilitator protein OS=Thermotoga maritima GN=glpF PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.404e-11
Identity = 64/218 (29.36%), Postives = 88/218 (40.37%), Query Frame = 3
Query:  255 IAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVV--------KGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIY-------NKDQAWDDPWI 863
            +AEF+ T L + +    V  V   KSK    G   I   +G  +   VY    ISG HINPAVT GL    +   +    Y+  Q LGA  GA +V        K       ++         + Y  G  L  EI+GT VL+  V           +     L PL +GF V+ + L+    TG  INP+R  G  L +        +D  W   W+
Sbjct:    5 LAEFLGTMLLIILGDGVVANVVLKKSKGHNSGWIVITTGWGLAVAMSVYLVGRISGAHINPAVTIGLAFIGQFPWSKVPGYIFSQILGAFVGAILVYLTYLPHWKETDDPDAKLAVFCTGPAVRKY--GANLLTEIIGTMVLLMGVLGI------GANKLADGLNPLLVGFLVWSIGLSLGGPTGYAINPARDFGPRLAHAILPIPGKRDSDWSYSWV 214          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: NIP42_ARATH (Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.128e-11
Identity = 52/200 (26.00%), Postives = 92/200 (46.00%), Query Frame = 3
Query:  255 IAEFVATFLFLY----ITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVK-GFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNK 836
            IAE + T+  ++    + V+ V+          T+   GI   +G ++  ++Y T  ISG H NPAVT    + R+        Y+  Q  G++  +  ++  F  +     G      +   S G  L AEI+ +F+L++ +   ATD++          LA + +G  + L      PI+G  +NP+RSLG A++  +
Sbjct:   46 IAEMIGTYFIIFSGCGVVVVNVL-------YGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAVFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPKAFFG-----TTPTDSSGQALVAEIIISFLLMFVISGVATDSRATGE------LAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMGR 227          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQP_NOSCE (Aquaporin OS=Nosema ceranae (strain BRL01) GN=AQP PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.085e-11
Identity = 59/221 (26.70%), Postives = 93/221 (42.08%), Query Frame = 3
Query:  255 IAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLG----AICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSA-----TDAKRNARDSHVP---------ILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            I EF A+F+F +    +++G +++      + I  +  A  G+  A++Y    I+  H NPA+TF     R+L     +F +I Q  G     +   AV+ G  K++ E+       ++   S+G   G E   T +LVY  F+      T  K    D   P         I APL IGF +    L  I  +G   NP   L   ++      WD  W+
Sbjct:   13 IGEFFASFIFGFAVYTSIIGSAQTGQSAGPI-IVALTIALSGV--AIIYSFCDITVAHFNPAITFSAMCFRRLPFFGGIFIIIFQVAGFIIAGLASVAVLPGKYKNKLEI--ARPKRVADNVSRGRIFGTEFFLTAILVYVAFAVGVNPYTPPKDEHGDQLDPDEGLTEGRKITAPLAIGFTLGFCALLGIASSGGAFNPGIVLSPMILTG---TWDFWWV 225          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: GLPF_STRCO (Probable glycerol uptake facilitator protein OS=Streptomyces coelicolor GN=glpF PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.335e-11
Identity = 66/240 (27.50%), Postives = 99/240 (41.25%), Query Frame = 3
Query:  255 IAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQY-------EMLGG----------------GANMLSKGYSKG-------DGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIY------NKDQA-WDDPWI 863
            I E + T L + +       V+   SK    G   IA+ +G  +    Y +  +SG H+NPAVT G+ + +    +    Y   Q LGA+ GA +V      Q+       E++GG                GA  +   +S G         L  EI+GTFVL+  + +      N   + + IL  L  GF V  + L+    TG  INP R LG  +++      NK  + W   WI
Sbjct:    8 IGETIGTALLILLGGGVCAAVTLKASKARNAGWLAIAFGWGFAVMTAAYISGPLSGAHLNPAVTVGIAI-KDGDWSNTPTYFAGQLLGAMIGAVLVWVAYYGQFQAHLTDREIVGGPGAQDTTAKSVEAQEKGAGPVLGVFSTGPEIRHTVQNLATEIIGTFVLLLAILT---QGLNDEGNGLGILGALITGFVVVSIGLSLGGPTGYAINPVRDLGPRIVHALLPLPNKGGSDWSYAWI 243          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: NIP13_ORYSJ (Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica GN=NIP1-3 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.100e-11
Identity = 57/203 (28.08%), Postives = 86/203 (42.36%), Query Frame = 3
Query:  231 SWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNK 836
            S  F +  IAE + TF  ++     V   + +K    TV   GI   +G  +  +VY    ISG H+NPAVT       +        Y   Q  G+   +A ++       E   G A       S    L  E + TF L++ V   ATD +       +  LA L +G  V +  L   PI+G  +NP+R++G A+I  +
Sbjct:   49 SVQFAQKVIAEILGTFFLIFAGCAAV---AVNKRTGGTVTFPGICITWGLAVMVMVYSVGHISGAHLNPAVTLAFATCGRFPWRRVPAYAAAQVAGSAAASAALRALFGGAPEHFFGTA----PAGSDVQSLAMEFIITFYLMFVVSGVATDNRA------IGELAGLAVGATVLVNVLFAGPISGASMNPARTIGPAIILGR 238          
The following BLAST results are available for this feature:
BLAST of FC872636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
AQPM_ARCFU8.231e-1229.41Probable aquaporin aqpM OS=Archaeoglobus fulgidus ... [more]
NIP31_MAIZE1.075e-1129.15Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1[more]
GLPF_STRPN1.075e-1128.37Glycerol uptake facilitator protein OS=Streptococc... [more]
GLPF_HAEIN1.075e-1129.27Glycerol uptake facilitator protein OS=Haemophilus... [more]
GLPF_THEMA1.404e-1129.36Probable glycerol uptake facilitator protein OS=Th... [more]
NIP42_ARATH3.128e-1126.00Probable aquaporin NIP4-2 OS=Arabidopsis thaliana ... [more]
AQP_NOSCE4.085e-1126.70Aquaporin OS=Nosema ceranae (strain BRL01) GN=AQP ... [more]
GLPF_STRCO5.335e-1127.50Probable glycerol uptake facilitator protein OS=St... [more]
NIP13_ORYSJ9.100e-1128.08Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872636 ID=FC872636; Name=FC872636; organism=Citrus clementina; type=EST; length=864bp
GGGGGAGCCCGTTGTGCCATTTATTTATTCTATTCACTCCCAAGAAACTT
GAACCTATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGA
AGAGGATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTG
GAACCGCGGCTCAAACTCAGGATGTGAAGGATTACACGGAGCCACCTCCG
GCGCCGCTCTTCGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGC
TGGCATTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTC
TAACAGTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGA
ATCCAGGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTA
CTGCACTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCG
GGCTGTTCTTGGCCCGAAAGCTGTCGCTTACCACGGCAGTTTTTTACATG
ATAATGCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCTT
TCAGAAAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCA
AAGGCTACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTTGGTACCTTT
GTTCTTGTTTACACTGTCTTCTCGGCCACTGATGCCAAGCGCAATGCCCG
CGATTCTCATGTTCCTATATTGGCACCCCTGCCCATAGGATTTGCTGTGT
TTTTGGTGCACTTGGCAACAATTCCTATCACAGGAACAGGCATTAACCCA
TCTAGGAGTCTTGGCGCAGCTCTGATATACAACAAGGACCAAGCCTGGGA
TGATCCTTGGATTT
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