FC872636

Overview
NameFC872636
Unique NameFC872636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length864
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 358.992 bits (920), Expect = 1.976e-98
Identity = 172/237 (72.57%), Postives = 196/237 (82.70%), Query Frame = 3
Query:  177 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG--------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            KDYT+PPPAPL +  EL SWS YRA IAEF+AT LFLYITV TV+G         S + + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL  A+ Y++ QCLGAICG  +VK FQ + ++  GGGAN L+ GYS+G GLGAEI+GTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINP+RSLGAA+IYNKD+ WDD WI
Sbjct:   19 KDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKAFQSAYFDRYGGGANSLASGYSRGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWI 255          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 5.750e-98
Identity = 176/244 (72.13%), Postives = 197/244 (80.74%), Query Frame = 3
Query:  156 AAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG--------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            AA   + KDY++PPPAPL +  EL+ WS YRA IAEFVAT LFLYITV TV+G         S   + C  VG+ GIAWAFGGMIF LVYCTAG+SGGHINPAVTFGLFLARK+SL  A+ Y++ QCLGAICG  +VKGFQ + Y   GGGAN LS GYSKG GL AEI+GTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINP+RSLGAA+IYN D+AWDD WI
Sbjct:    7 AAAAHEGKDYSDPPPAPLVDAEELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKGFQSAFYVRYGGGANELSAGYSKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNDKAWDDHWI 250          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 9.808e-98
Identity = 170/239 (71.13%), Postives = 195/239 (81.59%), Query Frame = 3
Query:  177 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK----------SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            KDYT+PPPAPL +  EL SWS YRA IAEF+AT LFLY+TV TV+G             + + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL  A+ YM+ QCLGA+CG  +VK FQ + ++  GGGAN L+ GYS+G GLGAEIVGTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINP+RSLGAA++YNKD+ WDD WI
Sbjct:   19 KDYTDPPPAPLVDAAELGSWSLYRAVIAEFIATLLFLYVTVATVIGYKHQTDASASGAGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMVAQCLGAVCGVGLVKAFQSAYFDRYGGGANSLASGYSRGAGLGAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNKDKPWDDHWI 257          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 1.281e-97
Identity = 170/236 (72.03%), Postives = 192/236 (81.36%), Query Frame = 3
Query:  177 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSK-------SKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            KDY +PPPAPL +P EL+ WS YRA IAEF+AT LFLYITVLT++G  +         ++C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL  A+ YMI QC GAICGA + KGFQKS Y   GGG N +S GY+KG  LGAEI+GTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINP+RS G A+I+N D+AWDD WI
Sbjct:   17 KDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSFYNRYGGGVNTVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWI 252          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 2.185e-97
Identity = 168/232 (72.41%), Postives = 190/232 (81.90%), Query Frame = 3
Query:  168 QDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            Q  KDY +PPPAP F+ GEL  WSF+RA IAEF+AT LFLYITV TV+G  K    C++VG+ GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL  A+ YMI QC GAICG  +VK F K  Y   GGGAN ++ GY+KG   GAE++GTFVLVYTVFSATD KR+ARDSHVPILAPLPIGFAVF+VHLATIPITGTGINP+RS GAA+IYNK + WDD WI
Sbjct:   14 QHGKDYVDPPPAPFFDMGELKLWSFWRAAIAEFIATLLFLYITVATVIGYKKETDPCASVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTAFGAELIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKKRVWDDHWI 245          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 354.369 bits (908), Expect = 4.868e-97
Identity = 172/231 (74.46%), Postives = 192/231 (83.12%), Query Frame = 3
Query:  177 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG--VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            KDYT+PPPAPLF+ GEL  WSFYRA IAEF+AT LFLYITV TV+G  V  S  +C  VG  GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK+S+  AV Y++ QCLG I G  +VKG  K QY   GGGANM++ GYS G  LGAEI+GTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINP+RS+GAA+IYN+ +AWDD WI
Sbjct:   15 KDYTDPPPAPLFDVGELRLWSFYRALIAEFIATLLFLYITVATVIGYKVQSSADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANGGGANMVASGYSTGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIYNQKKAWDDHWI 245          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 8.303e-97
Identity = 176/265 (66.42%), Postives = 199/265 (75.09%), Query Frame = 3
Query:   93 GKEEDVRVGANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG--------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            GKE DV  G                  V+DY +PPPAPL +  EL  WS YRA IAEFVAT LFLY+TV TV+G         S   + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL  A+ Y++ QCLGA+CG A+VKGFQ S Y+  GGGAN L+ GYSKG GL AEI+GTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINP+RSLGAA++YN  +AW D WI
Sbjct:    2 GKEADVEAGG-----------------VRDYEDPPPAPLVDIDELGRWSLYRAVIAEFVATLLFLYVTVATVIGYKHQTDASASGDDAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAVCGVALVKGFQSSFYDRYGGGANELAAGYSKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWI 249          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.416e-96
Identity = 168/229 (73.36%), Postives = 189/229 (82.53%), Query Frame = 3
Query:  177 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            KDY +PPPAPL +  EL  WSFYRA IAEF+AT LFLY+TV TV+G       C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL  AV YM+ QCLGAICG  +VK F  + Y+ LGGGAN ++ GYS G  LGAEI+GTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINP+RS GAA+IYN ++AWDD WI
Sbjct:   13 KDYVDPPPAPLLDMAELKLWSFYRAIIAEFIATLLFLYVTVATVIGHKNQTGPCGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAFMMTPYKRLGGGANTVADGYSTGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDHWI 241          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 350.517 bits (898), Expect = 7.029e-96
Identity = 173/235 (73.62%), Postives = 191/235 (81.28%), Query Frame = 3
Query:  177 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVS-KSKSK-----CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            +DY +PPP P F+  EL+ WS YRA IAEFVAT LFLYITVLTV+G   +S +K     C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL  AV YM+ QCLGAICG   VK FQ S Y+  GGGAN L+ GY+ G GL AEI+GTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINP+RS GAA+IYNK + WDD WI
Sbjct:   14 RDYEDPPPTPFFDADELTKWSLYRAVIAEFVATLLFLYITVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSYYDRYGGGANSLADGYNTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWI 248          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 7.029e-96
Identity = 171/246 (69.51%), Postives = 196/246 (79.67%), Query Frame = 3
Query:  150 GTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG--------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            G AA     KDYT+PPPAPL +  EL SWS YRA IAEF+AT LFLYITV TV+G         S + + C  VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL  A+ Y++ QCLGAICG  +VK FQ + +   GGGAN L+ GYSKG GL AEI+GTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINP+RS+GAA+I+N ++AW + WI
Sbjct:   10 GGAAGEFAAKDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAICGVGLVKAFQSAYFNRYGGGANTLAAGYSKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIFNNEKAWHNHWI 255          
The following BLAST results are available for this feature:
BLAST of FC872636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
PIP21_MAIZE1.976e-9872.57Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP25_MAIZE5.750e-9872.13Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP22_MAIZE9.808e-9871.13Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP27_MAIZE1.281e-9772.03Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP1_ATRCA2.185e-9772.41Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP26_ORYSJ4.868e-9774.46Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP25_ORYSJ8.303e-9766.42Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP28_ARATH1.416e-9673.36Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP22_ARATH7.029e-9673.62Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP21_ORYSJ7.029e-9669.51Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872636 ID=FC872636; Name=FC872636; organism=Citrus clementina; type=EST; length=864bp
GGGGGAGCCCGTTGTGCCATTTATTTATTCTATTCACTCCCAAGAAACTT
GAACCTATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGA
AGAGGATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTG
GAACCGCGGCTCAAACTCAGGATGTGAAGGATTACACGGAGCCACCTCCG
GCGCCGCTCTTCGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGC
TGGCATTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTC
TAACAGTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGA
ATCCAGGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTA
CTGCACTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCG
GGCTGTTCTTGGCCCGAAAGCTGTCGCTTACCACGGCAGTTTTTTACATG
ATAATGCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCTT
TCAGAAAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCA
AAGGCTACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTTGGTACCTTT
GTTCTTGTTTACACTGTCTTCTCGGCCACTGATGCCAAGCGCAATGCCCG
CGATTCTCATGTTCCTATATTGGCACCCCTGCCCATAGGATTTGCTGTGT
TTTTGGTGCACTTGGCAACAATTCCTATCACAGGAACAGGCATTAACCCA
TCTAGGAGTCTTGGCGCAGCTCTGATATACAACAAGGACCAAGCCTGGGA
TGATCCTTGGATTT
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