FC872636

Overview
NameFC872636
Unique NameFC872636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length864
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 1.199e-95
Identity = 173/237 (73.00%), Postives = 194/237 (81.86%), Query Frame = 3
Query:  177 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG--------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            KDY++PPPAPL +  EL+ WS YRA IAEFVAT LFLYITV TV+G         + + + CS VGI GIAWAFGGMIF LVYCTAG+SGGHINPAVTFGLFLARK+SL  AV Y++ Q LGAICG  +VKGFQ + Y   GGGAN LS GYSKG GL AEI+GTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINP+RSLGAA+IYN+ +AW D WI
Sbjct:   19 KDYSDPPPAPLIDAEELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQSDPGANAADAACSGVGILGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRAVLYIVAQSLGAICGVGLVKGFQSAFYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNQHKAWHDHWI 255          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.566e-95
Identity = 168/235 (71.49%), Postives = 193/235 (82.13%), Query Frame = 3
Query:  177 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK------SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            KDY +PPP PLF+  EL  WSFYRA IAEF+AT LFLY+T++TV+G         +  +C+ VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK++L  AV YM+ QCLGAICG A+VK FQ + +   GGGAN LS GYS G G+ AEI+GTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINP+RSLGAA+IYNKD+AWD  WI
Sbjct:   15 KDYQDPPPEPLFDATELGKWSFYRALIAEFIATLLFLYVTIMTVIGYKSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVTLVRAVMYMVAQCLGAICGVALVKAFQSAYFTRYGGGANGLSDGYSIGTGVAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSLGAAIIYNKDKAWDHHWI 249          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 7.771e-95
Identity = 171/235 (72.77%), Postives = 190/235 (80.85%), Query Frame = 3
Query:  177 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVS-KSKSK-----CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            +DY +PPP P F+  EL+ WS YRA IAEFVAT LFLY+TVLTV+G   +S +K     C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL  AV YM+ QCLGAICG   VK FQ S Y   GGGAN L+ GY+ G GL AEI+GTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINP+RS GAA+I+NK + WDD WI
Sbjct:   14 RDYEDPPPTPFFDAEELTKWSLYRAVIAEFVATLLFLYVTVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSHYVNYGGGANFLADGYNTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKSKPWDDHWI 248          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.326e-94
Identity = 168/237 (70.89%), Postives = 191/237 (80.59%), Query Frame = 3
Query:  177 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG--------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            +DY +PPPAPL +  EL  WS YRA IAEFVAT LFLY+TV TV+G        V+ + + C  VG+ GIAWAFGGMIF LVYCTAG+SGGHINPAVT GLFLARK+SL  A+ YM  QCLGAICG A+VKGFQ S Y+  GGGAN L+ GYS G GL AEI+GTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINP+RSLG A++YN ++AW D WI
Sbjct:   16 RDYIDPPPAPLVDVDELGKWSLYRALIAEFVATLLFLYVTVATVIGYKHQTDAAVNGADAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAICGVALVKGFQSSLYDRYGGGANELAAGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGVAVVYNNNKAWSDQWI 252          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.326e-94
Identity = 171/235 (72.77%), Postives = 186/235 (79.15%), Query Frame = 3
Query:  177 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSK------CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            +DY +PPPAP  +  EL  WSFYRA IAEFVAT LFLYITVLTV+G             C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL  A+ Y+I QCLGAICG   VK FQ S Y   GGGAN L+ GYS G GL AEI+GTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINP+RS GAA+IYNK + WDD WI
Sbjct:   16 RDYQDPPPAPFIDGAELKKWSFYRAVIAEFVATLLFLYITVLTVIGYKIQSDTDAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLPRALLYIIAQCLGAICGVGFVKAFQSSYYTRYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWI 250          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.731e-94
Identity = 167/243 (68.72%), Postives = 193/243 (79.42%), Query Frame = 3
Query:  153 TAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            T  ++   KDY +PPP   FE  EL  WSFYRA IAEF+AT LFLY+TVLTV+G      ++     C++VG+ GI+WAFGGMIF LVYCTAGISGGHINPAVTFGLFLA K+SL  AV YM+ QCLGA CG  +VK FQ + Y   GGGANMLS GY+ G G+GAEI+GTFVLVYTVFSATD KRNARDSH+P+LAPLPIGF+VF+VHLATIPITGTGINP+RS GAA+IYN  +AWDD WI
Sbjct:    7 TEEESLSGKDYLDPPPVKTFEVRELKKWSFYRAVIAEFIATLLFLYVTVLTVIGFKSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGATCGVGLVKVFQSTYYNRYGGGANMLSDGYNVGVGVGAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFSVFMVHLATIPITGTGINPARSFGAAVIYNNQKAWDDQWI 249          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 2.953e-94
Identity = 172/237 (72.57%), Postives = 188/237 (79.32%), Query Frame = 3
Query:  177 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG--------VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            +DY +PPPAPL +  EL  WS YRA IAEFVAT LFLYITV TV+G         S   + CS VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL  A+ YM  Q LGAICG A+VKGFQ   Y   GGGAN +S GYS G GL AEI+GTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINP+RSLGAA++YN  +AW D WI
Sbjct:   18 RDYADPPPAPLIDIDELGKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDASASGPDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMAAQSLGAICGVALVKGFQSGFYARYGGGANEVSAGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVVYNNSKAWSDQWI 254          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 3.857e-94
Identity = 167/235 (71.06%), Postives = 186/235 (79.15%), Query Frame = 3
Query:  177 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSK------CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            +DY +PPPAP F+  EL  W  YRA IAEFVAT LFLY+++LTV+G             C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVT GLFLARK+SL   V Y++ QCLGAICG   VK FQ S Y   GGGAN L+ GY+KG GLGAEI+GTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINP+RS GAA+IYN ++AWDD WI
Sbjct:   16 RDYKDPPPAPFFDMEELRKWPLYRAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAICGCGFVKAFQSSYYTRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWI 250          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 315.079 bits (806), Expect = 3.273e-85
Identity = 149/230 (64.78%), Postives = 176/230 (76.52%), Query Frame = 3
Query:  183 YTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSK---CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            Y +PPPAPL +  EL  WS YRA IAEF+AT +FLY+++ TV+G    ++    C+ VG  G+AW+FG  IF LVYCT G+SGGHINPAVT GLF  RKLSL   V Y++ QCLGAI GA +VKG  K  Y+ LGGGAN +S GYS    LGAEIVGTF+LVYTVFSATD KR ARDS +P+L PLPIGFAVF+VHLATIPITGTGINP+RSLGAA++YN+  AW D WI
Sbjct:   23 YWDPPPAPLLDTSELGKWSLYRALIAEFMATLIFLYVSIATVIGYKNQRATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVKGIMKRPYDALGGGANTVSDGYSAAGALGAEIVGTFILVYTVFSATDPKRTARDSFIPVLVPLPIGFAVFVVHLATIPITGTGINPARSLGAAVLYNQHAAWKDHWI 252          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.923e-77
Identity = 147/232 (63.36%), Postives = 172/232 (74.14%), Query Frame = 3
Query:  177 KDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKS-QYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALI--YNKDQAWDDPWI 863
            KDY +PPPAPL + GEL  WS YRA IAEF AT L + I+V TV+G  K +S     G+ GIAWAFGG+IF LVYCTAGISGGH+NPAVTF + LAR++SL  A  Y + QC+GA+CGA + +      QY   GGGAN L+ GYS G G+ AE+VGTFVLVYTVFSATD KR ARDSHVP+LAPLPIG AV +VHLATIPITGTGINP+RSLG AL+      +AW   WI
Sbjct:   12 KDYQDPPPAPLVDTGELGKWSLYRAAIAEFTATLLLVCISVSTVIG-EKRQSGEGGAGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYSAGAGVVAEMVGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGLAVLVVHLATIPITGTGINPARSLGPALVLGLGTTKAWSHLWI 242          
The following BLAST results are available for this feature:
BLAST of FC872636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
PIP23_ORYSJ1.199e-9573.00Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP25_ARATH1.566e-9571.49Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP23_ARATH7.771e-9572.77Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP24_ORYSJ1.326e-9470.89Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP21_ARATH1.326e-9472.77Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP26_ARATH1.731e-9468.72Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP26_MAIZE2.953e-9472.57Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP24_ARATH3.857e-9471.06Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP27_ORYSJ3.273e-8564.78Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP28_ORYSJ1.923e-7763.36Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1CH07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872636 ID=FC872636; Name=FC872636; organism=Citrus clementina; type=EST; length=864bp
GGGGGAGCCCGTTGTGCCATTTATTTATTCTATTCACTCCCAAGAAACTT
GAACCTATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGA
AGAGGATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTG
GAACCGCGGCTCAAACTCAGGATGTGAAGGATTACACGGAGCCACCTCCG
GCGCCGCTCTTCGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGC
TGGCATTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTC
TAACAGTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGA
ATCCAGGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTA
CTGCACTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCG
GGCTGTTCTTGGCCCGAAAGCTGTCGCTTACCACGGCAGTTTTTTACATG
ATAATGCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCTT
TCAGAAAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCA
AAGGCTACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTTGGTACCTTT
GTTCTTGTTTACACTGTCTTCTCGGCCACTGATGCCAAGCGCAATGCCCG
CGATTCTCATGTTCCTATATTGGCACCCCTGCCCATAGGATTTGCTGTGT
TTTTGGTGCACTTGGCAACAATTCCTATCACAGGAACAGGCATTAACCCA
TCTAGGAGTCTTGGCGCAGCTCTGATATACAACAAGGACCAAGCCTGGGA
TGATCCTTGGATTT
back to top